begin name zhu1 end name begin reactions CalciumInflux {1.0}$EXTERNAL = {1.0}Z CalciumInfluxstimulation {1.0}$EXTERNAL = {1.0}Z Calciumintocytoplasm {1.0}Y = {1.0}Z Calciumintostore {1.0}Z = {1.0}Y Leakage {1.0}Y = {1.0}Z Leakagefromcytoplasm {1.0}Z = {1.0}$EXTERNAL TFdegradation {1.0}X = {1.0}$EXTERNAL TFsynthesis {1.0}$EXTERNAL = {1.0}X TFsynthesisbasal {1.0}$EXTERNAL = {1.0}X end reactions begin rate equations CalciumInflux = CalciumInfluxv0 CalciumInfluxstimulation = CalciumInfluxstimulationbeta*CalciumInfluxstimulationv1 Calciumintocytoplasm = (CalciumintocytoplasmVm3*Y[t]^Calciumintocytoplasmm*Z[t]^Calciumintocytoplasmp)/((CalciumintocytoplasmKr^Calciumintocytoplasmm + Y[t]^Calciumintocytoplasmm)*(CalciumintocytoplasmKA^Calciumintocytoplasmp + Z[t]^Calciumintocytoplasmp)) Calciumintostore = (CalciumintostoreVm2*Z[t]^Calciumintostoren)/(CalciumintostoreK2^Calciumintostoren + Z[t]^Calciumintostoren) Leakage = Leakagek1*Y[t] Leakagefromcytoplasm = Leakagefromcytoplasmk*Z[t] TFdegradation = TFdegradationkd*X[t] TFsynthesis = (kf*X[t]^2)/(Kd + X[t]^2) TFsynthesisbasal = TFsynthesisbasalRbas end rate equations begin parameters Ka = 0.5 Kb = 0.5 Kd0 = 10.0 gamma = 9.0 kf0 = 6.0 TFdegradationkd = 1.0 TFsynthesisbasalRbas = 0.1 CalciumInfluxv0 = 1.0 CalciumInfluxstimulationv1 = 5.7 CalciumInfluxstimulationbeta = 0.3 CalciumintostoreVm2 = 30.0 CalciumintostoreK2 = 0.5 Calciumintostoren = 2.0 CalciumintocytoplasmVm3 = 325.0 CalciumintocytoplasmKr = 1.7 CalciumintocytoplasmKA = 0.46 Calciumintocytoplasmm = 2.0 Calciumintocytoplasmp = 4.0 Leakagek1 = 0.7 Leakagefromcytoplasmk = 10.0 cytoplasm = 1.0 store = 1.0 end parameters begin initial conditions X[0] = Xi Y[0] = Yi Z[0] = Zi end initial conditions begin initial values Xi = 15.0 Yi = 0.0 Zi = 0.25 end initial values begin assignment rules Kd := Kd0/(1 + Z[t]^4/Kb^4) kf := kf0*(1 + (gamma*Z[t]^4)/(Ka^4 + Z[t]^4)) end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations Y http://identifiers.org/chebi/CHEBI:22984 Y http://identifiers.org/kegg.compound/C00076 Z http://identifiers.org/chebi/CHEBI:22984 Z http://identifiers.org/kegg.compound/C00076 end species annotations begin units end units