#xie1

FIX: CYC

#reactions
re1:
 {1.0}CC + {1.0}PT = {1.0}CCPT
  wholeCell * CC * PT * bccpt
re10:
 $pool = {1.0}CLK
  wholeCell * clkm * tlclk
re15:
 {1.0}perm = $pool
  wholeCell * perm * dperm
re17:
 $pool = {1.0}PER
  wholeCell * perm * tlper
re2:
 {1.0}CC = $pool
  wholeCell * CC * dcc
re20:
 $pool = {1.0}perm
  wholeCell * ((1 - pow(1 - prcper, npt)) * tcccperp + pow(1 - prcper, npt) * tcdvpmt) * perp
re28:
 $pool = {1.0}vrim
  wholeCell * ((1 - pow(1 - prcv, nvri)) * tcccvrip + pow(1 - prcv, nvri) * tcdvpmt) * vrip
re3:
 {1.0}CCPT = $pool
  wholeCell * CCPT * dccpt
re30:
 {1.0}vrim = $pool
  wholeCell * vrim * dvrim
re31:
 $pool = {1.0}VRI
  wholeCell * vrim * tlvri
re32:
 {1.0}VRI = $pool
  wholeCell * VRI * dvri
re35:
 $pool = {1.0}pdpm
  wholeCell * ((1 - pow(1 - prcpdp, npdp)) * tcccpdpp + pow(1 - prcpdp, npdp) * tcdvpmt) * pdpp
re37:
 {1.0}pdpm = $pool
  wholeCell * pdpm * dpdpm
re38:
 $pool = {1.0}PDP
  wholeCell * pdpm * tlpdp
re39:
 {1.0}PDP = $pool
  wholeCell * PDP * dpdp
re4:
 {1.0}PT = $pool
  wholeCell * PT * dpt
re42:
 $pool = {1.0}clkm
  wholeCell * (prvc * tcvriclkp + prpc * tcpdpclkp + (1 - prvc - prpc) * tcclkp) * clkp
re43:
 {1.0}CLK + {1.0}CYC = {1.0}CC
  wholeCell * CLK * bcc * CYC
re44:
 {1.0}CLK = $pool
  wholeCell * CLK * dclk
re45:
 {1.0}CC = {1.0}CLK + {1.0}CYC
  wholeCell * CC * ubcc
re46:
 {1.0}PER + {1.0}TIM = {1.0}PT
  wholeCell * PER * TIM * bpt
re47:
 {1.0}PT = {1.0}PER + {1.0}TIM
  wholeCell * PT * ubpt
re48:
 {1.0}PER = $pool
  wholeCell * PER * dper
re51:
 $pool = {1.0}timm
  wholeCell * ((1 - pow(1 - prct, npt)) * tccctimp + pow(1 - prct, npt) * tcdvpmt) * timp
re53:
 {1.0}timm = $pool
  wholeCell * timm * dtimm
re54:
 $pool = {1.0}TIM
  wholeCell * timm * tltim
re55:
 {1.0}TIM = $pool
  wholeCell * TIM * dtim
re56:
 {1.0}CCPT = {1.0}CC + {1.0}PT
  wholeCell * CCPT * ubccpt
re57:
 $pool = {1.0}prcper
  wholeCell * (1 - prcper) * bccperp * CC
re58:
 {1.0}prcper = $pool
  wholeCell * prcper * ubccperp
re59:
 {1.0}prcv = $pool
  wholeCell * ubccvrip * prcv
re60:
 $pool = {1.0}prcv
  wholeCell * (1 - prcv) * bccvrip * CC
re61:
 {1.0}prcpdp = $pool
  wholeCell * ubccpdpp * prcpdp
re62:
 $pool = {1.0}prcpdp
  wholeCell * (1 - prcpdp) * bccpdpp * CC
re63:
 $pool = {1.0}prvc
  wholeCell * (1 - prvc - prpc) * bvriclkp * VRI
re64:
 {1.0}prvc = $pool
  wholeCell * prvc * ubvriclkp
re65:
 $pool = {1.0}prpc
  wholeCell * (1 - prvc - prpc) * bpdpclkp * PDP
re66:
 {1.0}prpc = $pool
  wholeCell * prpc * ubpdpclkp
re68:
 $pool = {1.0}prct
  wholeCell * (1 - prct) * bcctimp * CC
re69:
 {1.0}prct = $pool
  wholeCell * prct * ubcctimp
re9:
 {1.0}clkm = $pool
  wholeCell * clkm * dclkm


#parameters
bcc = 2.349
bccpdpp = 0.062
bccperp = 0.069
bccpt = 51.0
bcctimp = 0.069
bccvrip = 0.1
bpdpclkp = 1.155
bpt = 1.1
bvriclkp = 1.858
dcc = 0.184
dccpt = 15.06
dclk = 0.2
dclkm = 0.643
dpdp = 0.156
dpdpm = 0.06
dper = 0.62
dperm = 0.053
dpt = 0.279
dtim = 0.62
dtimm = 0.053
dvri = 1.226
dvrim = 0.07
npdp = 6.0
npt = 5.0
nvri = 4.0
tcccpdpp = 9.831
tcccperp = 11.0
tccctimp = 11.0
tcccvrip = 16.86
tcclkp = 1.42
tcdvpmt = 0.028
tcpdpclkp = 125.54
tcvriclkp = 0.053
tlclk = 35.0
tlpdp = 1.87
tlper = 36.0
tltim = 36.0
tlvri = 14.68
ubcc = 0.89
ubccpdpp = 0.145
ubccperp = 0.262
ubccpt = 7.89
ubcctimp = 0.262
ubccvrip = 0.276
ubpdpclkp = 0.952
ubpt = 2.93
ubvriclkp = 1.043
CYC = 1.0
wholeCell = 1.0


#initial values
CC = 0.5566
CCPT = 0.4982
CLK = 3.6628
PDP = 4.1953
PER = 2.7527
PT = 0.4014
TIM = 2.7527
VRI = 3.175
clkm = 0.2583
clkp = 0.003185
pdpm = 0.3175
pdpp = 0.003185
perm = 0.2395
perp = 0.003185
prcpdp = 0.0
prcper = 0.0
prct = 0.0
prcv = 0.0
prpc = 0.0
prvc = 0.0
timm = 0.2395
timp = 0.003185
vrim = 0.2571
vrip = 0.003185


#assignment rules