#vanEunen1 FIX: ACE ADP AMP ATP ETOH F26BP GLCo GLY T6P TREH #reactions v_1: {1.0}GLCo = {1.0}GLCi (VMAXGLT*(GLCo/KMGLTGLCo - GLCi/(KMGLTGLCo*KEQGLT)))/(1 + GLCo/KMGLTGLCo + GLCi/KMGLTGLCi + 0.91*(GLCo*GLCi)/(KMGLTGLCo*KMGLTGLCi)) v_10: {1.0}BPG + {1.0}ADP = {1.0}P3G + {1.0}ATP (VMAXPGK*((KEQPGK*BPG*ADP)/(KMPGKP3G*KMPGKATP) - (P3G*ATP)/(KMPGKP3G*KMPGKATP)))/((1 +BPG/KMPGKBPG + P3G/KMPGKP3G)*(1 + ATP/KMPGKATP + ADP/KMPGKADP)) v_11: {1.0}P3G = {1.0}P2G (VMAXPGM*(P3G/KMPGMP3G - P2G/(KMPGMP3G*KEQPGM)))/(1 + P3G/KMPGMP3G + P2G/KMPGMP2G) v_12: {1.0}P2G = {1.0}PEP (VMAXENO*(P2G/KMENOP2G - PEP/(KMENOP2G*KEQENO)))/(1 + P2G/KMENOP2G + PEP/KMENOPEP) v_13: {1.0}PEP + {1.0}ADP = {1.0}PYR + {1.0}ATP (VMAXPYK*PEP/KMPYKPEP*(1 + PEP/KMPYKPEP)**(n10 - 1))/(L10*((ATP/KMPYKATP + 1)/(F16P/KMPYKF16P +1))**n10 + (1 + PEP/KMPYKPEP)**n10)*ADP/(ADP + KMPYKADP) v_14: {1.0}PYR = {1.0}ACALD (VMAXPDC*PYR**NHPDC)/(KMPDCPYR**NHPDC*(1 + PYR**NHPDC/KMPDCPYR**NHPDC)) v_15: {2.0}PYR = {3.0}NADH KSUC v_16: {1.0}ACALD + {1.0}NADH = {1.0}ETOH -(VMAXADH*(((NADt - NADH)*ETOH)/(KIADHNAD*KMADHETOH) - (NADH*ACALD)/(KIADHNAD*KMADHETOH*KEQADH)))/((1 + (NADt - NADH)/KIADHNAD + (KMADHNAD*ETOH)/(KIADHNAD*KMADHETOH) + (KMADHNADH*ACALD)/(KIADHNADH*KMADHACALD) + NADH/KIADHNADH + ((NADt - NADH)* ETOH)/(KIADHNAD*KMADHETOH) + (KMADHNADH *(NADt - NADH)*ACALD)/(KIADHNAD*KIADHNADH*KMADHACALD) + (KMADHNAD*ETOH*NADH)/(KIADHNAD*KMADHETOH*KIADHNADH) + (NADH*ACALD)/(KIADHNADH*KMADHACALD) + ((NADt - NADH)* ETOH*ACALD)/(KIADHNAD*KMADHETOH*KIADHACALD) + (ETOH*NADH*ACALD)/(KIADHETOH*KIADHNADH*KMADHACALD))) v_17: {1.0}ACALD = {1.0}NADH + {1.0}ACE KACE*ACALD v_2: {1.0}GLCi + {1.0}ATP = {1.0}G6P + {1.0}ADP (VMAXHK*(GLCi/KMHKGLCi*ATP/KMHKATP - (G6P*ADP)/(KMHKGLCi*KMHKATP*KEQHK) ))/((1 + GLCi/KMHKGLCi + G6P/KMHKG6P + T6P/KIHKT6P)*(1 + ATP/KMHKATP + ADP/KMHKADP)) v_3: {1.0}TREH = {2.0}GLCi KTRE1 v_4: {1.0}G6P = {1.0}F6P (VMAXPGI*(G6P/KMPGIG6P - F6P/(KMPGIG6P*KEQPGI)))/(1 + G6P/KMPGIG6P + F6P/KMPGIF6P) v_5: {2.0}G6P + {1.0}ATP = {1.0}TREH + {1.0}ADP KTRE2 v_6: {1.0}F6P + {1.0}ATP = {1.0}F16P + {1.0}ADP (VMAXPFK*gR*F6P*ATP*(1 + F6P/KMPFKF6P*ATP/KMPFKATP + (gR*F6P*ATP)/(KMPFKF6P*KMPFKATP)))/(KMPFKF6P*KMPFKATP*((1 + F6P/KMPFKF6P*ATP/KMPFKATP + (gR*F6P*ATP)/(KMPFKF6P*KMPFKATP))**2 + ((L0*(1 + (CiPFKATP*ATP)/KiPFKATP)**2*(1 + (CPFKAMP*AMP)/KPFKAMP)**2*(1 + (CPFKF26BP*F26BP)/KPFKF26BP + (CPFKF16BP*F16P)/KPFKF16BP)**2)/((1 + ATP/KiPFKATP)**2*(1 + AMP/KPFKAMP)**2*(1 + F26BP/KPFKF26BP + F16P/KPFKF16BP)**2))*(1 + (CPFKATP*ATP)/KMPFKATP)**2)) v_7: {1.0}F16P = {2.0}TRIO (VMAXALD*(F16P/KMALDF16P - (KEQTPI/(1 + KEQTPI)*TRIO*1/(1 + KEQTPI)*TRIO)/(KMALDF16P*KEQALD)))/(1 + F16P/KMALDF16P + (KEQTPI/(1 + KEQTPI)*TRIO)/KMALDGAP + (1/(1 + KEQTPI)*TRIO)/KMALDDHAP + (KEQTPI/(1 + KEQTPI)*TRIO*1/(1 + KEQTPI)*TRIO)/(KMALDGAP*KMALDDHAP) + (F16P*KEQTPI/(1 + KEQTPI)*TRIO)/( KMALDGAPi*KMALDF16P)) v_8: {1.0}NADH + {1.0}TRIO = {1.0}GLY KGLY v_9: {1.0}TRIO = {1.0}BPG + {1.0}NADH (CGAPDH*((VMAXGAPDHf*KEQTPI/(1 + KEQTPI)*TRIO*(NADt - NADH))/(KMGAPDHGAP*KMGAPDHNAD) -(VMAXGAPDHr*BPG*NADH)/(KMGAPDHBPG*KMGAPDHNADH)))/((1 + (KEQTPI/(1 + KEQTPI)*TRIO)/KMGAPDHGAP + BPG/KMGAPDHBPG)*(1 + (NADt - NADH)/KMGAPDHNAD +NADH/KMGAPDHNADH)) #parameters CGAPDH = 1.0 CPFKAMP = 0.0845 CPFKATP = 3.0 CPFKF16BP = 0.397 CPFKF26BP = 0.0174 CiPFKATP = 100.0 KACE = 0.5 KEQADH = 6.9e-05 KEQALD = 0.069 KEQENO = 6.7 KEQGLT = 1.0 KEQHK = 3800.0 KEQPGI = 0.314 KEQPGK = 3200.0 KEQPGM = 0.19 KEQTPI = 0.045 KGLY = 17.5 KIADHACALD = 1.1 KIADHETOH = 90.0 KIADHNAD = 0.92 KIADHNADH = 0.031 KIHKT6P = 0.04 KMADHACALD = 1.11 KMADHETOH = 17.0 KMADHNAD = 0.17 KMADHNADH = 0.11 KMALDDHAP = 2.4 KMALDF16P = 0.3 KMALDGAP = 2.0 KMALDGAPi = 10.0 KMENOP2G = 0.04 KMENOPEP = 0.5 KMGAPDHBPG = 0.51 KMGAPDHGAP = 0.39 KMGAPDHNAD = 2.85 KMGAPDHNADH = 0.007 KMGLTGLCi = 1.6 KMGLTGLCo = 1.6 KMHKADP = 0.23 KMHKATP = 0.15 KMHKG6P = 30.0 KMHKGLCi = 0.08 KMPDCPYR = 6.36 KMPFKATP = 0.71 KMPFKF6P = 0.1 KMPGIF6P = 0.3 KMPGIG6P = 1.4 KMPGKADP = 0.2 KMPGKATP = 0.3 KMPGKBPG = 0.003 KMPGKP3G = 0.53 KMPGMP2G = 0.08 KMPGMP3G = 1.2 KMPYKADP = 0.3 KMPYKATP = 9.3 KMPYKF16P = 0.2 KMPYKPEP = 0.19 KPFKAMP = 0.0995 KPFKF16BP = 0.111 KPFKF26BP = 0.000682 KSUC = 0.9 KTRE1 = 2.1 KTRE2 = 0.0 KiPFKATP = 0.65 L0 = 0.66 L10 = 60000.0 NADt = 1.59 NHPDC = 1.9 VMAXADH = 817.0 VMAXALD = 189.0 VMAXENO = 357.0 VMAXGAPDHf = 2090.0 VMAXGAPDHr = 1211.0 VMAXGLT = 220.0 VMAXHK = 285.0 VMAXPDC = 248.0 VMAXPFK = 213.0 VMAXPGI = 808.0 VMAXPGK = 2670.0 VMAXPGM = 856.0 VMAXPYK = 559.0 gR = 5.12 n10 = 4.0 ACE = 10.0 ADP = 1.0 AMP = 0.3 ATP = 5.0 ETOH = 25.0 F26BP = 0.014 GLCo = 50.0 GLY = 10.0 T6P = 2.2 TREH = 2.0 default_compartment = 1.0 external_compartment = 1.0 #initial values ACALD = 0.04 BPG = 1e-05 F16P = 12.0 F6P = 0.74 G6P = 3.8 GLCi = 0.1 NADH = 0.29 P2G = 0.09 P3G = 0.69 PEP = 0.1 PYR = 2.8 TRIO = 1.0 #assignment rules