begin name tyson10 end name begin reactions r1 {1.0}$EXTERNAL = {1.0}X r2 {1.0}X = {1.0}$EXTERNAL r3 {1.0}$EXTERNAL = {1.0}Yp r4 {1.0}Yp = {1.0}$EXTERNAL r5 {1.0}$EXTERNAL = {1.0}Rp r6 {1.0}Rp = {1.0}$EXTERNAL end reactions begin rate equations r1 = env*(k0 + k1*S) r2 = env*(k2 + k2prime*Rp[t])*X[t] r3 = (env*k3*X[t]*(Yt - Yp[t]))/(Km3 + Yt - Yp[t]) r4 = (env*k4*Yp[t])/(Km4 + Yp[t]) r5 = (env*k5*(Rt - Rp[t])*Yp[t])/(Km5 + Rt - Rp[t]) r6 = (env*k6*Rp[t])/(Km6 + Rp[t]) end rate equations begin parameters Km3 = 0.01 Km4 = 0.01 Km5 = 0.01 Km6 = 0.01 Rt = 1.0 Yt = 1.0 k0 = 0.0 k1 = 1.0 k2 = 0.01 k2prime = 10.0 k3 = 0.1 k4 = 0.2 k5 = 0.1 k6 = 0.05 S = 0.0 env = 1.0 end parameters begin initial conditions Rp[0] = Rpi X[0] = Xi Yp[0] = Ypi end initial conditions begin initial values Rpi = 0.0 Xi = 0.0 Ypi = 0.0 end initial values begin assignment rules R := Rt - Rp[t] Y := Yt - Yp[t] end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units