#sharp1 FIX: species_1 species_10 species_12 species_16 species_17 species_18 species_2 species_22 species_23 species_25 species_26 species_27 species_3 species_4 species_53 species_6 species_7 species_8 #reactions reaction_1: {1.0}species_4 + {1.0}species_3 + {1.0}species_1 + {1.0}species_8 + {1.0}species_6 + {1.0}species_2 + {1.0}species_7 = {1.0}species_5 compartment_1 * (k1 * species_4 * species_3 * species_1 * species_8 * species_6 * species_2 * species_7 - k2 * species_5) reaction_10: {2.0}species_21 = {1.0}species_24 + {2.0}species_21 compartment_1 * k1 * pow(species_21, 2) reaction_11: {1.0}species_22 = {1.0}species_24 compartment_1 * k1 * species_22 reaction_12: {1.0}species_24 = {1.0}species_23 compartment_1 * k1 * species_24 reaction_13: {1.0}species_24 + {1.0}species_25 + {1.0}species_27 + {1.0}species_26 + {1.0}species_16 = {1.0}species_28 compartment_1 * (k1 * species_24 * species_25 * species_27 * species_26 * species_16 - k2 * species_28) reaction_14: {1.0}species_14 = {1.0}species_15 compartment_1 * function_2(k, species_28, species_14, Km) reaction_15: {1.0}species_29 + {1.0}species_31 = {1.0}species_30 compartment_1 * (k1 * species_29 * species_31 - k2 * species_30) reaction_16: {1.0}species_15 + {1.0}species_30 = {1.0}species_32 compartment_1 * (k1 * species_15 * species_30 - k2 * species_32) reaction_17: {1.0}species_33 + {1.0}species_31 = {1.0}species_34 compartment_1 * (k1 * species_33 * species_31 - k2 * species_34) reaction_18: {1.0}species_15 + {1.0}species_34 = {1.0}species_35 compartment_1 * (k1 * species_15 * species_34 - k2 * species_35) reaction_19: {1.0}species_36 + {1.0}species_31 = {1.0}species_37 compartment_1 * (k1 * species_36 * species_31 - k2 * species_37) reaction_2: {1.0}species_9 + {1.0}species_10 = {1.0}species_11 compartment_1 * function_1(k1, species_5, species_9, species_10, k2, species_11) reaction_20: {1.0}species_15 + {1.0}species_37 = {1.0}species_38 compartment_1 * (k1 * species_15 * species_37 - k2 * species_38) reaction_21: {1.0}species_32 = {1.0}species_15 + {1.0}species_31 compartment_1 * k1 * species_32 reaction_22: {1.0}species_35 = {1.0}species_15 + {1.0}species_31 compartment_1 * k1 * species_35 reaction_23: {1.0}species_38 = {1.0}species_15 + {1.0}species_31 compartment_1 * k1 * species_38 reaction_24: {1.0}species_30 = {1.0}species_31 compartment_1 * k1 * species_30 reaction_25: {1.0}species_34 = {1.0}species_31 compartment_1 * k1 * species_34 reaction_26: {1.0}species_37 = {1.0}species_31 compartment_1 * k1 * species_37 reaction_27: {1.0}species_31 = {1.0}species_39 compartment_1 * (k1 * species_31 - k2 * species_39) reaction_28: {1.0}species_40 + {1.0}species_39 = {1.0}species_41 compartment_1 * (k1 * species_40 * species_39 - k2 * species_41) reaction_29: {1.0}species_42 + {1.0}species_39 = {1.0}species_43 compartment_1 * (k1 * species_42 * species_39 - k2 * species_43) reaction_3: {1.0}species_11 + {1.0}species_12 = {1.0}species_13 compartment_1 * (k1 * species_11 * species_12 - k2 * species_13) reaction_30: {1.0}species_44 + {1.0}species_39 = {1.0}species_45 compartment_1 * (k1 * species_44 * species_39 - k2 * species_45) reaction_31: {1.0}species_22 = {1.0}species_46 compartment_1 * k1 * species_22 reaction_32: {2.0}species_39 = {1.0}species_46 + {2.0}species_39 compartment_1 * k1 * pow(species_39, 2) reaction_33: {1.0}species_46 = {1.0}species_23 compartment_1 * k1 * species_46 reaction_34: {1.0}species_22 = {1.0}species_47 compartment_1 * k1 * species_22 reaction_35: {1.0}species_47 = {1.0}species_23 compartment_1 * k1 * species_47 reaction_36: {1.0}species_22 = {1.0}species_48 compartment_1 * k1 * species_22 reaction_37: {1.0}species_48 = {1.0}species_23 compartment_1 * k1 * species_48 reaction_38: {1.0}species_15 + {1.0}species_29 = {1.0}species_49 compartment_1 * (k1 * species_15 * species_29 - k2 * species_49) reaction_39: {1.0}species_46 = {1.0}species_29 + {1.0}species_46 compartment_1 * k1 * species_46 reaction_4: {1.0}species_14 = {1.0}species_15 compartment_1 * function_2(k, species_13, species_14, Km) reaction_40: {1.0}species_29 = {1.0}species_23 compartment_1 * k1 * species_29 reaction_41: {1.0}species_29 = {1.0}species_40 compartment_1 * (k1 * species_29 - k2 * species_40) reaction_42: {1.0}species_15 + {1.0}species_33 = {1.0}species_50 compartment_1 * (k1 * species_15 * species_33 - k2 * species_50) reaction_43: {1.0}species_47 = {1.0}species_33 + {1.0}species_47 compartment_1 * k1 * species_47 reaction_44: {1.0}species_33 = {1.0}species_23 compartment_1 * k1 * species_33 reaction_45: {1.0}species_33 = {1.0}species_42 compartment_1 * (k1 * species_33 - k2 * species_42) reaction_46: {1.0}species_15 + {1.0}species_36 = {1.0}species_51 compartment_1 * (k1 * species_15 * species_36 - k2 * species_51) reaction_47: {1.0}species_48 = {1.0}species_36 + {1.0}species_48 compartment_1 * k1 * species_48 reaction_48: {1.0}species_36 = {1.0}species_23 compartment_1 * k1 * species_36 reaction_49: {1.0}species_36 = {1.0}species_44 compartment_1 * (k1 * species_36 - k2 * species_44) reaction_5: {1.0}species_15 = {1.0}species_14 compartment_1 * k1 * species_15 reaction_50: {1.0}species_49 + {1.0}species_31 = {1.0}species_32 compartment_1 * (k1 * species_49 * species_31 - k2 * species_32) reaction_51: {1.0}species_41 = {1.0}species_30 compartment_1 * k1 * species_41 reaction_52: {1.0}species_50 + {1.0}species_31 = {1.0}species_35 compartment_1 * (k1 * species_50 * species_31 - k2 * species_35) reaction_53: {1.0}species_43 = {1.0}species_34 compartment_1 * k1 * species_43 reaction_54: {1.0}species_51 + {1.0}species_31 = {1.0}species_38 compartment_1 * (k1 * species_51 * species_31 - k2 * species_38) reaction_55: {1.0}species_45 = {1.0}species_37 compartment_1 * k1 * species_45 reaction_56: {1.0}species_49 = {1.0}species_15 compartment_1 * k1 * species_49 reaction_57: {1.0}species_50 = {1.0}species_15 compartment_1 * k1 * species_50 reaction_58: {1.0}species_51 = {1.0}species_15 compartment_1 * k1 * species_51 reaction_59: {2.0}species_39 = {1.0}species_24 + {2.0}species_39 compartment_1 * k1 * pow(species_39, 2) reaction_6: {1.0}species_4 + {1.0}species_3 + {1.0}species_1 + {1.0}species_8 + {1.0}species_18 + {1.0}species_17 + {1.0}species_16 + {1.0}species_53 = {1.0}species_52 compartment_1 * (k1 * species_4 * species_3 * species_1 * species_8 * species_18 * species_17 * species_16 * species_53 - k2 * species_52) reaction_7: {1.0}species_19 = {1.0}species_20 compartment_1 * function_2(k, species_52, species_19, Km) reaction_8: {1.0}species_20 = {1.0}species_19 compartment_1 * k1 * species_20 reaction_9: {1.0}species_20 = {1.0}species_21 compartment_1 * (k1 * species_20 - k2 * species_21) #parameters species_1 = 1.0 species_10 = 1.0 species_12 = 1.0 species_16 = 1.0 species_17 = 1.0 species_18 = 1.0 species_2 = 1.0 species_22 = 1.0 species_23 = 0.0 species_25 = 1.0 species_26 = 1.0 species_27 = 1.0 species_3 = 1.0 species_4 = 1.0 species_53 = 1.0 species_6 = 1.0 species_7 = 1.0 species_8 = 1.0 reaction_27_k2 = 8e-05 reaction_28_k1 = 0.5 reaction_28_k2 = 0.0005 reaction_29_k1 = 0.5 reaction_29_k2 = 0.0005 reaction_30_k1 = 0.5 reaction_30_k2 = 0.0005 reaction_31_k1 = 1.54e-06 reaction_32_k1 = 0.0165 reaction_33_k1 = 0.00028 reaction_34_k1 = 1.78e-07 reaction_35_k1 = 0.00028 reaction_36_k1 = 1.27e-07 reaction_37_k1 = 0.00028 reaction_38_k1 = 0.0225 reaction_38_k2 = 0.00125 reaction_39_k1 = 0.00408 reaction_40_k1 = 0.000113 reaction_41_k1 = 0.0003 reaction_41_k2 = 0.0002 reaction_42_k1 = 0.006 reaction_42_k2 = 0.00175 reaction_43_k1 = 0.00408 reaction_44_k1 = 0.000113 reaction_45_k1 = 0.00015 reaction_45_k2 = 0.0001 reaction_46_k1 = 0.009 reaction_46_k2 = 0.00175 reaction_47_k1 = 0.00408 reaction_48_k1 = 0.000113 reaction_49_k1 = 0.00015 reaction_49_k2 = 0.0001 reaction_50_k1 = 0.5 reaction_50_k2 = 0.0005 reaction_51_k1 = 0.0138 reaction_52_k1 = 0.5 reaction_52_k2 = 0.0005 reaction_53_k1 = 0.0052 reaction_54_k1 = 0.5 reaction_54_k2 = 0.0005 reaction_55_k1 = 0.0052 reaction_56_k1 = 0.00407 reaction_57_k1 = 0.0015 reaction_58_k1 = 0.0022 reaction_59_k1 = 0.001 reaction_20_k1 = 0.07 reaction_20_k2 = 0.00175 reaction_21_k1 = 0.0204 reaction_22_k1 = 0.0075 reaction_23_k1 = 0.011 reaction_24_k1 = 2.25e-05 reaction_25_k1 = 2.25e-05 reaction_26_k1 = 2.25e-05 reaction_27_k1 = 0.09 reaction_1_k1 = 0.0001 reaction_1_k2 = 0.0001 reaction_2_k1 = 0.001 reaction_2_k2 = 0.001 reaction_3_k1 = 0.003 reaction_3_k2 = 0.01 reaction_4_k = 0.1 reaction_4_Km = 0.1 reaction_5_k1 = 0.1 reaction_6_k1 = 0.0001 reaction_6_k2 = 0.0001 reaction_7_k = 0.1 reaction_7_Km = 0.1 reaction_8_k1 = 0.1 reaction_9_k1 = 0.1 reaction_9_k2 = 0.1 reaction_10_k1 = 0.02 reaction_11_k1 = 0.001 reaction_12_k1 = 0.1 reaction_13_k1 = 0.1 reaction_13_k2 = 0.1 reaction_14_k = 0.1 reaction_14_Km = 0.1 reaction_15_k1 = 0.5 reaction_15_k2 = 0.0005 reaction_16_k1 = 0.185 reaction_16_k2 = 0.0125 reaction_17_k1 = 0.5 reaction_17_k2 = 0.0005 reaction_18_k1 = 0.048 reaction_18_k2 = 0.00175 reaction_19_k1 = 0.5 reaction_19_k2 = 0.0005 compartment_1 = 1.0 #initial values species_11 = 0.0 species_13 = 0.0 species_14 = 0.1 species_15 = 0.0 species_19 = 1.0 species_20 = 0.0 species_21 = 0.0 species_24 = 0.0 species_28 = 0.0 species_29 = 0.0 species_30 = 0.0 species_31 = 0.1 species_32 = 0.0 species_33 = 0.0 species_34 = 0.0 species_35 = 0.0 species_36 = 0.0 species_37 = 0.0 species_38 = 0.0 species_39 = 0.0 species_40 = 0.0 species_41 = 0.0 species_42 = 0.0 species_43 = 0.0 species_44 = 0.0 species_45 = 0.0 species_46 = 0.0 species_47 = 0.0 species_48 = 0.0 species_49 = 0.0 species_5 = 0.0 species_50 = 0.0 species_51 = 0.0 species_52 = 0.0 species_9 = 1.0 #assignment rules