begin name sarma8 end name begin reactions reaction0 {1.0}species0 = {1.0}species1 reaction1 {1.0}species2 = {1.0}species3 reaction10 {1.0}species7 = {1.0}species11 reaction11 {1.0}$EXTERNAL = {1.0}species12 reaction12 {1.0}species12 = {1.0}species13 reaction13 {1.0}species13 = {1.0}$EXTERNAL reaction14 {1.0}$EXTERNAL = {1.0}species14 reaction15 {1.0}species14 = {1.0}$EXTERNAL reaction16 {1.0}species5 = {1.0}species16 reaction17 {1.0}species6 = {1.0}species17 reaction18 {1.0}species14 = {1.0}species18 reaction19 {1.0}species11 = {1.0}species17 reaction2 {1.0}species3 = {1.0}species4 reaction20 {1.0}species17 = {1.0}species16 reaction21 {1.0}species18 = {1.0}$EXTERNAL reaction3 {1.0}species5 = {1.0}species6 reaction4 {1.0}species6 = {1.0}species7 reaction5 {1.0}species1 = {1.0}species0 reaction6 {1.0}species4 = {1.0}species3 reaction7 {1.0}species3 = {1.0}species2 reaction8 {1.0}species7 = {1.0}species6 reaction9 {1.0}species6 = {1.0}species5 end reactions begin rate equations reaction0 = compartment0*function411[reaction0K1, reaction0KI, reaction0V1, species0[t], species7[t]] reaction1 = compartment0*function431[reaction1A, reaction1K3, reaction1Ka, reaction1k3, species1[t], species2[t], species3[t], species7[t]] reaction10 = compartment0*function1[reaction10k11f, species7[t], reaction10k11b, species11[t]] reaction11 = compartment0*function2[reaction11V12, reaction11n12, reaction11K12, species11[t]] reaction12 = compartment0*reaction12k1*species12[t] reaction13 = compartment0*reaction13k1*species13[t] reaction14 = compartment0*function3[reaction14k15, species13[t]] reaction15 = compartment0*reaction15k1*species14[t] reaction16 = compartment0*(-(reaction16k2*species16[t]) + reaction16k1*species5[t]) reaction17 = compartment0*(-(reaction17k2*species17[t]) + reaction17k1*species6[t]) reaction18 = compartment0*(reaction18k1*species14[t] - reaction18k2*species18[t]) reaction19 = compartment0*function4[species11[t], species17[t], species18[t], reaction19k21, reaction19K21, reaction19K21i] reaction2 = compartment0*function441[reaction2A, reaction2K4, reaction2Ka, reaction2k4, species1[t], species2[t], species3[t], species7[t]] reaction20 = compartment0*function5[species18[t], species17[t], species11[t], reaction20k22, reaction20K22, reaction20K22i] reaction21 = compartment0*reaction21k1*species18[t] reaction3 = compartment0*function471[reaction3K7, reaction3k7, species4[t], species5[t], species6[t]] reaction4 = compartment0*function481[reaction4K8, reaction4k8, species4[t], species5[t], species6[t]] reaction5 = compartment0*function421[reaction5K2, reaction5k2, species1[t], species8[t]] reaction6 = compartment0*function451[reaction6K5, reaction6k5, species3[t], species4[t], species9[t]] reaction7 = compartment0*function461[reaction7K6, reaction7k6, species3[t], species4[t], species9[t]] reaction8 = compartment0*function491[reaction8K9, reaction8k9, species10[t], species6[t], species7[t]] reaction9 = compartment0*function4101[reaction9K10, reaction9k10, species10[t], species6[t], species7[t]] end rate equations begin parameters reaction0K1 = 20.0 reaction0KI = 9.0 reaction0V1 = 2.5 reaction1A = 10.0 reaction1K3 = 20.0 reaction1Ka = 500.0 reaction1k3 = 0.1 reaction2A = 10.0 reaction2K4 = 20.0 reaction2Ka = 500.0 reaction2k4 = 0.1 reaction3K7 = 20.0 reaction3k7 = 0.1 reaction4K8 = 20.0 reaction4k8 = 0.1 reaction5K2 = 200.0 reaction5k2 = 0.025 reaction6K5 = 200.0 reaction6k5 = 0.1 reaction7K6 = 200.0 reaction7k6 = 0.1 reaction8K9 = 200.0 reaction8k9 = 0.1 reaction9K10 = 200.0 reaction9k10 = 0.1 reaction10k11f = 10.34 reaction10k11b = 2.86 reaction11V12 = 29.24 reaction11n12 = 3.97 reaction11K12 = 169.0 reaction12k1 = 0.022 reaction13k1 = 0.0078 reaction14k15 = 0.0012 reaction15k1 = 0.00025 reaction16k1 = 10.34 reaction16k2 = 2.86 reaction17k1 = 10.34 reaction17k2 = 2.86 reaction18k1 = 22.56 reaction18k2 = 15.4 reaction19k21 = 0.68 reaction19K21 = 10300.0 reaction19K21i = 87.0 reaction20k22 = 0.31 reaction20K22 = 87.0 reaction20K22i = 10300.0 reaction21k1 = 0.00025 compartment0 = 1.0 end parameters begin initial conditions species0[0] = species0i species1[0] = species1i species10[0] = species10i species11[0] = species11i species12[0] = species12i species13[0] = species13i species14[0] = species14i species15[0] = species15i species16[0] = species16i species17[0] = species17i species18[0] = species18i species2[0] = species2i species3[0] = species3i species4[0] = species4i species5[0] = species5i species6[0] = species6i species7[0] = species7i species8[0] = species8i species9[0] = species9i end initial conditions begin initial values species0i = 999.999903688753 species1i = 0.0 species10i = 499.999975922188 species11i = 0.0 species12i = 0.0 species13i = 0.0 species14i = 0.0 species15i = 0.0 species16i = 0.0 species17i = 0.0 species18i = 0.0 species2i = 3999.99961475501 species3i = 0.0 species4i = 0.0 species5i = 999.999903688753 species6i = 0.0 species7i = 0.0 species8i = 99.9999903688752 species9i = 499.999951844377 end initial values begin assignment rules end assignment rules begin function definitions function451[K5_,k5_,species3_,species4_,species9_] := (k5*species4*species9)/(K5*(1 + species3/K5 + species4/K5)) function461[K6_,k6_,species3_,species4_,species9_] := (k6*species3*species9)/(K6*(1 + species3/K6 + species4/K6)) function411[K1_,KI_,V1_,species0_,species7_] := (species0*V1)/(K1*(1 + species0/K1)*(1 + species7/KI)) function441[A_,K4_,Ka_,k4_,species1_,species2_,species3_,species7_] := (k4*species1*species3*(1 + (A*species7)/Ka))/(K4*(1 + species2/K4 + species3/K4)*(1 + species7/Ka)) function471[K7_,k7_,species4_,species5_,species6_] := (k7*species4*species5)/(K7*(1 + species5/K7 + species6/K7)) function481[K8_,k8_,species4_,species5_,species6_] := (k8*species4*species6)/(K8*(1 + species5/K8 + species6/K8)) function421[K2_,k2_,species1_,species8_] := (k2*species1*species8)/(K2*(1 + species1/K2)) function491[K9_,k9_,species10_,species6_,species7_] := (k9*species10*species7)/(K9*(1 + species6/K9 + species7/K9)) function2[V12_,n12_,K12_,MPPn_] := (MPPn^n12*V12)/(K12^n12 + MPPn^n12) function1[k11f_,ppERKc_,k11b_,ppERKn_] := k11f*ppERKc - k11b*ppERKn function4101[K10_,k10_,species10_,species6_,species7_] := (k10*species10*species6)/(K10*(1 + species6/K10 + species7/K10)) function5[P3n_,MPn_,MPPn_,k22_,K22_,K22i_] := (k22*MPn*P3n)/(K22*(1 + MPPn/K22i + MPn/K22)) function4[MPPn_,MPn_,P3n_,k21_,K21_,K21i_] := (k21*MPPn*P3n)/(K21*(1 + MPPn/K21 + MPn/K21i)) function3[k15_,P3mRNA_] := k15*P3mRNA function431[A_,K3_,Ka_,k3_,species1_,species2_,species3_,species7_] := (k3*species1*species2*(1 + (A*species7)/Ka))/(K3*(1 + species2/K3 + species3/K3)*(1 + species7/Ka)) end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units