begin name olsen end name begin reactions v1 {1.0}NADH + {1.0}O2 = {1.0}H2O2 + {1.0}$NAD v10 {1.0}per3 + {1.0}NADrad = {1.0}per2 + {1.0}$NAD v11 {1.0}O2 + {1.0}per2 = {1.0}coIII v12 {1.0}$NADHres = {1.0}NADH v13 {1.0}$O2g = {1.0}O2 v14 {1.0}O2 = {1.0}$O2g v15 {1.0}NADH + {1.0}Ar = {1.0}NADrad + {1.0}ArH v2 {1.0}per3 + {1.0}H2O2 = {1.0}coI v3 {1.0}coI + {1.0}ArH = {1.0}coII + {1.0}Ar v4 {1.0}coII + {1.0}ArH = {1.0}per3 + {1.0}Ar v5 {1.0}O2 + {1.0}NADrad = {1.0}super + {1.0}$NAD v6 {1.0}per3 + {1.0}super = {1.0}coIII v7 {2.0}super = {1.0}O2 + {1.0}H2O2 v8 {1.0}NADrad + {1.0}coIII = {1.0}coI + {1.0}$NAD v9 {2.0}NADrad = {1.0}$NAD2 end reactions begin rate equations v1 = k1*NADH[t]*O2[t] v10 = k10*NADrad[t]*per3[t] v11 = k11*O2[t]*per2[t] v12 = k12 v13 = k13f v14 = k13b*O2[t] v15 = k14*Ar[t]*NADH[t] v2 = k2*H2O2[t]*per3[t] v3 = k3*ArH[t]*coI[t] v4 = k4*ArH[t]*coII[t] v5 = k5*NADrad[t]*O2[t] v6 = k6*per3[t]*super[t] v7 = k7*super[t]^2 v8 = k8*coIII[t]*NADrad[t] v9 = k9*NADrad[t]^2 end rate equations begin parameters k1 = "3e-06" k10 = 1.8 k11 = 0.1 k12 = 0.08 k13b = 0.006 k13f = 0.072 k14 = 0.7 k2 = 18.0 k3 = 0.15 k4 = 0.0052 k5 = 20.0 k6 = 17.0 k7 = 20.0 k8 = 40.0 k9 = 60.0 NAD = 0.0 NAD2 = 0.0 NADHres = 1.0 O2g = 1.0 defaultcompartment = 1.0 end parameters begin initial conditions Ar[0] = Ari ArH[0] = ArHi H2O2[0] = H2O2i NADH[0] = NADHi NADrad[0] = NADradi O2[0] = O2i coI[0] = coIi coII[0] = coIIi coIII[0] = coIIIi per2[0] = per2i per3[0] = per3i super[0] = superi end initial conditions begin initial values Ari = 0.0 ArHi = 300.0 H2O2i = 0.7 NADHi = 0.0 NADradi = 0.0 O2i = 12.0 coIi = 0.0 coIIi = 0.0 coIIIi = 0.0 per2i = 0.0 per3i = 1.2 superi = 0.0 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units