begin name maheshvare1 end name begin reactions ATPADPCHANGE {1.0}$EXTERNAL = {1.0}atp ATPconsumption {1.0}atp + {1.0}$h2o = {1.0}adp + {1.0}$h ATPformation {1.0}adp + {1.0}$h = {1.0}atp + {1.0}$h2o ENO {1.0}pg2 = {1.0}pep + {1.0}$h2o FBA {1.0}fbp = {1.0}dhap + {1.0}grap FBP {1.0}fbp + {1.0}$h2o = {1.0}f6p FBP26 {1.0}f26bp + {1.0}$h2o = {1.0}f6p GAPD {1.0}grap = {1.0}bpg13 + {1.0}$h GLCt1r {1.0}$glcext = {1.0}glc HEX1 {1.0}glc + {1.0}atp = {1.0}g6p + {1.0}adp + {1.0}$h IRS {1.0}$EXTERNAL = {1.0}$insext + {1.0}$cpepext LDHL {1.0}pyr + {1.0}$h = {1.0}lac LLACt2r {1.0}lac = {1.0}$lacext PFK {1.0}f6p + {1.0}atp = {1.0}adp + {1.0}fbp + {1.0}$h PFK26 {1.0}atp + {1.0}f6p = {1.0}adp + {1.0}f26bp + {1.0}$h PGI {1.0}g6p = {1.0}f6p PGK {1.0}adp + {1.0}bpg13 = {1.0}atp + {1.0}pg3 PGM {1.0}pg3 = {1.0}pg2 PYK {1.0}pep + {1.0}adp + {1.0}$h = {1.0}pyr + {1.0}atp PYRt2r {1.0}pyr = {1.0}$pyrmito TPI {1.0}dhap = {1.0}grap end reactions begin rate equations ATPADPCHANGE = (-atpadp + atpadpss)*cyto*NUCLEOTIDECHANGEVm ATPconsumption = (ATPconsumptionVm*cyto*atp[t])/(ATPconsumptionKMatp*(1 + atp[t]/ATPconsumptionKMatp)) ATPformation = (ATPformationVm*cyto*phos*adp[t])/(ATPformationKMadp*ATPformationKMphos*(1 + phos/ATPformationKMphos)*(1 + adp[t]/ATPformationKMadp)) ENO = (cyto*ENOVm*(-(pep[t]/ENOKeq) + pg2[t]))/(ENOKMpg2*(1 + pep[t]/ENOKMpep + pg2[t]/ENOKMpg2)) FBA = (cyto*FBAVm*(fbp[t] - (dhap[t]*grap[t])/FBAKeq))/(FBAKMfbp*(fbp[t]/FBAKMfbp + (1 + dhap[t]/FBAKMdhap)*(1 + grap[t]/FBAKMgrap))) FBP = (cyto*FBPVm*fbp[t])/(FBPKMfbp*(1 + fbp[t]/FBPKMfbp)) FBP26 = (cyto*FBP26Vm*f26bp[t])/(FBP26KMf26bp*(1 + f26bp[t]/FBP26KMf26bp)) GAPD = (cyto*GAPDVm*(-((nadh*bpg13[t])/GAPDKeq) + nad*phos*grap[t]))/(GAPDKMgrap*GAPDKMnad*GAPDKMphos*(-1 + (1 + nadh/GAPDKMnadh)*(1 + bpg13[t]/GAPDKMbpg13) + (1 + nad/GAPDKMnad)*(1 + phos/GAPDKMphos)*(1 + grap[t]/GAPDKMgrap))) GLCt1r = (cyto*GLCt1rVm*(glcext - glc[t]/GLCt1rKeq))/(GLCt1rKMglcext*(1 + glcext/GLCt1rKMglcext + glc[t]/GLCt1rKMglc)) HEX1 = (cyto*HEX1Vm*(-((adp[t]*g6p[t])/HEX1Keq) + atp[t]*glc[t]))/(HEX1KMatp*HEX1KMglc*(-1 + (1 + adp[t]/HEX1KMadp)*(1 + g6p[t]/HEX1KMg6p) + (1 + atp[t]/HEX1KMatp)*(1 + glc[t]/HEX1KMglc))) IRS = cyto*(IRSfp + IRSss) LDHL = (cyto*LDHLVm*(-((nad*lac[t])/LDHLKeq) + nadh*pyr[t]))/(LDHLKMnadh*LDHLKMpyr*(-1 + (1 + nad/LDHLKMnad)*(1 + lac[t]/LDHLKMlac) + (1 + nadh/LDHLKMnadh)*(1 + pyr[t]/LDHLKMpyr))) LLACt2r = (cyto*LLACt2rVm*lac[t])/(LLACt2rKMlac*(1 + lac[t]/LLACt2rKMlac)) PFK = (cyto*PFKVm*atp[t]*f6p[t])/(PFKKMatp*PFKKMf6p*(1 + atp[t]/PFKKMatp)*(1 + f6p[t]/PFKKMf6p)) PFK26 = (cyto*PFK26Vm*atp[t]*f6p[t])/(PFK26KMatp*PFK26KMf6p*(1 + atp[t]/PFK26KMatp)*(1 + f6p[t]/PFK26KMf6p)) PGI = (cyto*PGIVm*(-(f6p[t]/PGIKeq) + g6p[t]))/(PGIKMg6p*(1 + f6p[t]/PGIKMf6p + g6p[t]/PGIKMg6p)) PGK = (cyto*PGKVm*(adp[t]*bpg13[t] - (atp[t]*pg3[t])/PGKKeq))/(PGKKMadp*PGKKMbpg13*(-1 + (1 + adp[t]/PGKKMadp)*(1 + bpg13[t]/PGKKMbpg13) + (1 + atp[t]/PGKKMatp)*(1 + pg3[t]/PGKKMpg3))) PGM = (cyto*PGMVm*(-(pg2[t]/PGMKeq) + pg3[t]))/(PGMKMpg3*(1 + pg2[t]/PGMKMpg2 + pg3[t]/PGMKMpg3)) PYK = (cyto*PYKVm*(adp[t]*pep[t] - (atp[t]*pyr[t])/PYKKeq))/(PYKKMadp*PYKKMpep*(-1 + (1 + adp[t]/PYKKMadp)*(1 + pep[t]/PYKKMpep) + (1 + atp[t]/PYKKMatp)*(1 + pyr[t]/PYKKMpyr))) PYRt2r = (cyto*PYRt2rVm*pyr[t])/(PYRt2rKMpyr*(1 + pyr[t]/PYRt2rKMpyr)) TPI = (cyto*TPIVm*(dhap[t] - grap[t]/TPIKeq))/(TPIKMdhap*(1 + dhap[t]/TPIKMdhap + grap[t]/TPIKMgrap)) end rate equations begin parameters ATPconsumptionKMatp = 2.0 ATPconsumptionVm = 5.58245 ATPformationKMadp = 5.6 ATPformationKMphos = 3.4 ATPformationVm = 42.6819 ENOKMpep = 0.089 ENOKMpg2 = 0.3 ENOKeq = 4.38534496525434 ENOVm = 191.263 FBAKMdhap = 0.38 FBAKMfbp = 0.027 FBAKMgrap = 0.32 FBAKeq = 0.000133163971260293 FBAVm = 500.562 FBP26KMf26bp = 0.013 FBP26Vm = 8.05946 FBPKMfbp = 0.1 FBPVm = 0.01 GAPDKMbpg13 = 0.018 GAPDKMgrap = 0.07 GAPDKMnad = 0.75 GAPDKMnadh = 0.012 GAPDKMphos = 3.4 GAPDKeq = 0.497383227406177 GAPDVm = 4950.28 GLCt1rKMglc = 17.0 GLCt1rKMglcext = 17.0 GLCt1rKeq = 1.0 GLCt1rVm = 1000.0 HEX1KMadp = 0.63 HEX1KMatp = 0.63 HEX1KMg6p = 19.9 HEX1KMglc = 5.0 HEX1Keq = 2255.52682196071 HEX1Vm = 2.71005 IRSfpKdatpdt = 0.0003 IRSfpVm = 0.05 IRSssKatpratio = 5.13347666690148 IRSssVm = 0.02 IRSsshillatpratio = 7.10527645078065 LDHLKMlac = 3.0 LDHLKMnad = 0.211 LDHLKMnadh = 0.0107 LDHLKMpyr = 0.398 LDHLKeq = 100.0 LDHLVm = 7.26844 LLACt2rKMlac = 0.8 LLACt2rVm = 5.21331 NUCLEOTIDECHANGEVm = 0.2 PFK26KMatp = 0.328 PFK26KMf6p = 0.017 PFK26Vm = 4.19328 PFKKMatp = 0.063 PFKKMf6p = 0.35 PFKVm = 7.48024 PGIKMf6p = 0.12 PGIKMg6p = 0.35 PGIKeq = 0.364659218171184 PGIVm = 4525.64 PGKKMadp = 0.126 PGKKMatp = 0.24 PGKKMbpg13 = 0.042 PGKKMpg3 = 0.27 PGKKeq = 1931.283 PGKVm = 4912.9 PGMKMpg2 = 0.139 PGMKMpg3 = 0.22 PGMKeq = 0.174472843901766 PGMVm = 5000.0 PYKKMadp = 0.22 PYKKMatp = 0.86 PYKKMpep = 0.18 PYKKMpyr = 3.0 PYKKeq = 20593.3056361955 PYKVm = 7.44078 PYRt2rKMpyr = 0.15 PYRt2rVm = 0.0575902 TPIKMdhap = 0.62 TPIKMgrap = 0.55 TPIKeq = 0.113860326083997 TPIVm = 4572.25 fscale = 1.0 presimduration = 60.0 presimglcext = 3.0 simglcext = 3.0 cpepext = 0.0 glcext = 2.8 h = 1.0 h2o = 1.0 insext = "6e-08" lacext = 1.0 pyrmito = 1.0 cell = 0.001321 mm = 1.0 pm = 1.0 end parameters begin initial conditions adp[0] = adpi atp[0] = atpi bpg13[0] = bpg13i dhap[0] = dhapi f26bp[0] = f26bpi f6p[0] = f6pi fbp[0] = fbpi g6p[0] = g6pi glc[0] = glci grap[0] = grapi lac[0] = laci pep[0] = pepi pg2[0] = pg2i pg3[0] = pg3i pyr[0] = pyri end initial conditions begin initial values adpi = 1.199 atpi = 3.921 bpg13i = 0.018 dhapi = 0.011 f26bpi = 0.002 f6pi = 0.008 fbpi = 0.019 g6pi = 0.113 glci = 2.571 grapi = 0.003 laci = 1.083 pepi = 0.477 pg2i = 0.14 pg3i = 0.669 pyri = 0.392 end initial values begin assignment rules ext := 1000*cell cyto := 0.95*cell mito := 0.05*cell atpadp := adp[t] + atp[t] atpratio := atp[t]/(1/100000000 + adp[t]) nadhnad := nad + nadh nadhratio := nadh/(1/100000000 + nad) fbpgrap := fbp[t] + grap[t] fbpdhapgrap := dhap[t] + fbp[t] + grap[t] fbpdhap := dhap[t] + fbp[t] lacpyrratio := lac[t]/pyr[t] phos := Piecewise[{{10.1746465657385, glcext < 2.4}, {10.1746465657385 - 0.184822580052604*(-2.4 + glcext), glcext >= 2.4 && glcext < 4}, {9.87893043765431 - 0.184822580052604*(-4 + glcext), glcext >= 4 && glcext < 8.6}, {9.02874656941233 - 0.184822580052604*(-8.6 + glcext), glcext >= 8.6 && glcext < 14.5}, {7.93829334710197 - 0.184822580052604*(-14.5 + glcext), glcext >= 14.5 && glcext < 16}, {7.66105947702306, glcext >= 16}}, 0] nad := 0.59 + (0.3*glcext^1.39)/(10.20979845132981 + glcext^1.39) nadh := 0.13 + (0.23*glcext^1.53)/(29.47951197523888 + glcext^1.53) datpdt := -ATPconsumption + ATPformation + ATPADPCHANGE - HEX1 - PFK - PFK26 + PGK + PYK IRSpervol := IRS/cell atpadpss := 4.66 + (1.87*glcext^2.03)/(16.764209380544166 + glcext^2.03) IRSss := (IRSssVm*(atp[t]/adp[t])^IRSsshillatpratio)/(IRSssKatpratio^IRSsshillatpratio + (atp[t]/adp[t])^IRSsshillatpratio) IRSfp := Piecewise[{{(datpdt*IRSfpVm)/(datpdt + IRSfpKdatpdt), datpdt > 0}}, 0] end assignment rules begin function definitions end function definitions begin events event_simulation = (t >= presimduration, {glcext -> simglcext}, 0) event_presimulation = (presimduration > 0 && t < presimduration, {glcext -> presimglcext}, 0) end events begin process annotations ATP_ADP_CHANGE http://identifiers.org/SBO:0000176 ATPconsumption http://identifiers.org/SBO:0000176 ATPformation http://identifiers.org/SBO:0000176 ENO http://identifiers.org/SBO:0000176 ENO http://identifiers.org/vmhreaction/ENO ENO http://identifiers.org/rhea/10167 ENO http://identifiers.org/rhea/10164 ENO http://identifiers.org/metanetx.reaction/MNXR97932 ENO http://identifiers.org/seed/rxn00459 ENO http://identifiers.org/bigg.reaction/ENO ENO http://identifiers.org/biocyc/META:2PGADEHYDRAT-RXN ENO http://identifiers.org/ec-code/4.2.1.11 ENO http://identifiers.org/kegg.reaction/R00658 ENO http://identifiers.org/uniprot/P06733 ENO http://identifiers.org/uniprot/P13929 ENO http://identifiers.org/uniprot/P09104 FBA http://identifiers.org/SBO:0000176 FBA http://identifiers.org/vmhreaction/FBA FBA http://identifiers.org/rhea/14729 FBA http://identifiers.org/rhea/14732 FBA http://identifiers.org/metanetx.reaction/MNXR99459 FBA http://identifiers.org/seed/rxn00786 FBA http://identifiers.org/bigg.reaction/FBA FBA http://identifiers.org/ec-code/4.1.2.13 FBA http://identifiers.org/kegg.reaction/R01068 FBA http://identifiers.org/uniprot/P09972 FBA http://identifiers.org/uniprot/P04075 FBA http://identifiers.org/uniprot/P05062 FBP http://identifiers.org/SBO:0000176 FBP http://identifiers.org/vmhreaction/FBP FBP http://identifiers.org/metanetx.reaction/MNXR99465 FBP http://identifiers.org/seed/rxn00549 FBP http://identifiers.org/bigg.reaction/FBP FBP http://identifiers.org/ec-code/3.1.3.11 FBP http://identifiers.org/rhea/11064 FBP http://identifiers.org/uniprot/P09467 FBP http://identifiers.org/uniprot/Q9UMQ9 FBP http://identifiers.org/uniprot/O00757 FBP http://identifiers.org/uniprot/Q9UJ73 FBP http://identifiers.org/uniprot/Q9UMR0 FBP26 http://identifiers.org/SBO:0000176 FBP26 http://identifiers.org/vmhreaction/FBP26 FBP26 http://identifiers.org/metanetx.reaction/MNXR99466 FBP26 http://identifiers.org/bigg.reaction/FBP26 FBP26 http://identifiers.org/biocyc/META:3.1.3.46-RXN FBP26 http://identifiers.org/ec-code/3.1.3.46 FBP26 http://identifiers.org/kegg.reaction/R02731 FBP26 http://identifiers.org/rhea/17289 FBP26 http://identifiers.org/uniprot/Q16875 FBP26 http://identifiers.org/uniprot/Q9NQ88 FBP26 http://identifiers.org/uniprot/Q16877 FBP26 http://identifiers.org/uniprot/P16118 FBP26 http://identifiers.org/uniprot/O60825 GAPD http://identifiers.org/SBO:0000176 GAPD http://identifiers.org/vmhreaction/GAPD GAPD http://identifiers.org/rhea/10303 GAPD http://identifiers.org/rhea/10300 GAPD http://identifiers.org/metanetx.reaction/MNXR100040 GAPD http://identifiers.org/seed/rxn00781 GAPD http://identifiers.org/bigg.reaction/GAPD GAPD http://identifiers.org/biocyc/META:GAPOXNPHOSPHN-RXN GAPD http://identifiers.org/ec-code/1.2.1.12 GAPD http://identifiers.org/kegg.reaction/R01061 GAPD http://identifiers.org/uniprot/P04406 GAPD http://identifiers.org/uniprot/O14556 GLCt1r http://identifiers.org/SBO:0000655 GLCt1r http://identifiers.org/vmhreaction/GLCt1r GLCt1r http://identifiers.org/bigg.reaction/GLCt1 GLCt1r http://identifiers.org/biocyc/META:TRANS-RXN0-574 GLCt1r http://identifiers.org/metanetx.reaction/MNXR100188 HEX1 http://identifiers.org/SBO:0000176 HEX1 http://identifiers.org/vmhreaction/HEX1 HEX1 http://identifiers.org/rhea/17825 HEX1 http://identifiers.org/rhea/17828 HEX1 http://identifiers.org/metanetx.reaction/MNXR100612 HEX1 http://identifiers.org/seed/rxn00216 HEX1 http://identifiers.org/bigg.reaction/HEX1 HEX1 http://identifiers.org/biocyc/META:GLUCOKIN-RXN HEX1 http://identifiers.org/ec-code/2.7.1.1 HEX1 http://identifiers.org/kegg.reaction/R00299 HEX1 http://identifiers.org/uniprot/P35557 IRS http://identifiers.org/SBO:0000655 IRS http://identifiers.org/GO:0030073 LDH_L http://identifiers.org/SBO:0000176 LDH_L http://identifiers.org/vmhreaction/LDH_L LDH_L http://identifiers.org/rhea/23444 LDH_L http://identifiers.org/rhea/23447 LDH_L http://identifiers.org/metanetx.reaction/MNXR101040 LDH_L http://identifiers.org/seed/rxn00499 LDH_L http://identifiers.org/bigg.reaction/LDH_L LDH_L http://identifiers.org/biocyc/META:L-LACTATE-DEHYDROGENASE-RXN LDH_L http://identifiers.org/ec-code/1.1.1.27 LDH_L http://identifiers.org/kegg.reaction/R00703 LDH_L http://identifiers.org/uniprot/P00338 LDH_L http://identifiers.org/uniprot/P07864 LDH_L http://identifiers.org/uniprot/P07195 LDH_L http://identifiers.org/uniprot/Q9BYZ2 L_LACt2r http://identifiers.org/SBO:0000655 L_LACt2r http://identifiers.org/vmhreaction/L_LACt2r L_LACt2r http://identifiers.org/metanetx.reaction/MNXR101277 L_LACt2r http://identifiers.org/seed/rxn05602 L_LACt2r http://identifiers.org/bigg.reaction/L_LACt2r L_LACt2r http://identifiers.org/biocyc/META:TRANS-RXN-104 L_LACt2r http://identifiers.org/rhea/29415 PFK http://identifiers.org/SBO:0000176 PFK http://identifiers.org/vmhreaction/PFK PFK http://identifiers.org/metanetx.reaction/MNXR102507 PFK http://identifiers.org/seed/rxn00545 PFK http://identifiers.org/bigg.reaction/PFK PFK http://identifiers.org/ec-code/2.7.1.11 PFK http://identifiers.org/rhea/16109 PFK http://identifiers.org/uniprot/P17858 PFK http://identifiers.org/uniprot/P08237 PFK http://identifiers.org/uniprot/Q01813 PFK26 http://identifiers.org/SBO:0000176 PFK26 http://identifiers.org/vmhreaction/PFK26 PFK26 http://identifiers.org/rhea/15656 PFK26 http://identifiers.org/rhea/15653 PFK26 http://identifiers.org/metanetx.reaction/MNXR102508 PFK26 http://identifiers.org/seed/rxn01971 PFK26 http://identifiers.org/bigg.reaction/PFK26 PFK26 http://identifiers.org/biocyc/META:6-PHOSPHOFRUCTO-2-KINASE-RXN PFK26 http://identifiers.org/ec-code/2.7.1.105 PFK26 http://identifiers.org/kegg.reaction/R02732 PFK26 http://identifiers.org/uniprot/Q16877 PFK26 http://identifiers.org/uniprot/Q16875 PFK26 http://identifiers.org/uniprot/P16118 PFK26 http://identifiers.org/uniprot/O60825 PGI http://identifiers.org/SBO:0000176 PGI http://identifiers.org/vmhreaction/PGI PGI http://identifiers.org/metanetx.reaction/MNXR102535 PGI http://identifiers.org/seed/rxn00558 PGI http://identifiers.org/bigg.reaction/PGI PGI http://identifiers.org/biocyc/META:PGLUCISOM-RXN PGI http://identifiers.org/ec-code/5.3.1.9 PGI http://identifiers.org/uniprot/P06744 PGK http://identifiers.org/SBO:0000176 PGK http://identifiers.org/vmhreaction/PGK PGK http://identifiers.org/rhea/14801 PGK http://identifiers.org/rhea/14804 PGK http://identifiers.org/metanetx.reaction/MNXR102538 PGK http://identifiers.org/seed/rxn01100 PGK http://identifiers.org/bigg.reaction/PGK PGK http://identifiers.org/biocyc/META:PHOSGLYPHOS-RXN PGK http://identifiers.org/ec-code/2.7.2.3 PGK http://identifiers.org/kegg.reaction/R01512 PGK http://identifiers.org/uniprot/P00558 PGK http://identifiers.org/uniprot/P07205 PGM http://identifiers.org/SBO:0000176 PGM http://identifiers.org/vmhreaction/PGM PGM http://identifiers.org/rhea/15901 PGM http://identifiers.org/rhea/15904 PGM http://identifiers.org/metanetx.reaction/MNXR102547 PGM http://identifiers.org/seed/rxn01106 PGM http://identifiers.org/bigg.reaction/PGM PGM http://identifiers.org/biocyc/META:3PGAREARR-RXN PGM http://identifiers.org/ec-code/5.4.2.1 PGM http://identifiers.org/kegg.reaction/R01518 PGM http://identifiers.org/uniprot/P15259 PGM http://identifiers.org/uniprot/P07738 PGM http://identifiers.org/uniprot/P18669 PYK http://identifiers.org/SBO:0000176 PYK http://identifiers.org/vmhreaction/PYK PYK http://identifiers.org/rhea/18160 PYK http://identifiers.org/rhea/18157 PYK http://identifiers.org/metanetx.reaction/MNXR103371 PYK http://identifiers.org/seed/rxn00148 PYK http://identifiers.org/bigg.reaction/PYK PYK http://identifiers.org/biocyc/META:PEPDEPHOS-RXN PYK http://identifiers.org/ec-code/2.7.1.40 PYK http://identifiers.org/kegg.reaction/R00200 PYK http://identifiers.org/uniprot/P14618 PYK http://identifiers.org/uniprot/P30613 PYRt2r http://identifiers.org/SBO:0000655 PYRt2r http://identifiers.org/vmhreaction/PYRt2r PYRt2r http://identifiers.org/bigg.reaction/PYRt2 PYRt2r http://identifiers.org/metanetx.reaction/MNXR103385 TPI http://identifiers.org/SBO:0000176 TPI http://identifiers.org/vmhreaction/TPI TPI http://identifiers.org/metanetx.reaction/MNXR104918 TPI http://identifiers.org/seed/rxn00747 TPI http://identifiers.org/bigg.reaction/TPI TPI http://identifiers.org/biocyc/META:TRIOSEPISOMERIZATION-RXN TPI http://identifiers.org/ec-code/5.3.1.1 TPI http://identifiers.org/kegg.reaction/R01015 TPI http://identifiers.org/rhea/18585 TPI http://identifiers.org/uniprot/P60174 end process annotations begin species annotations adp http://identifiers.org/SBO:0000247 adp http://identifiers.org/inchikey/XTWYTFMLZFPYCI-KQYNXXCUSA-N adp http://identifiers.org/vmhmetabolite/adp adp http://identifiers.org/bigg.metabolite/adp adp http://identifiers.org/kegg.compound/C00008 adp http://identifiers.org/hmdb/HMDB01341 adp http://identifiers.org/hmdb/HMDB0001341 adp http://identifiers.org/biocyc/META:ADP adp http://identifiers.org/CHEBI:40553 adp http://identifiers.org/CHEBI:456216 adp http://identifiers.org/CHEBI:13222 adp http://identifiers.org/CHEBI:16761 adp http://identifiers.org/CHEBI:2342 adp http://identifiers.org/CHEBI:87518 adp http://identifiers.org/CHEBI:22244 adp http://identifiers.org/metanetx.chemical/MNXM7 adp http://identifiers.org/seed.compound/cpd00008 atp http://identifiers.org/SBO:0000247 atp http://identifiers.org/inchikey/ZKHQWZAMYRWXGA-KQYNXXCUSA-J atp http://identifiers.org/vmhmetabolite/atp atp http://identifiers.org/bigg.metabolite/atp atp http://identifiers.org/kegg.compound/C00002 atp http://identifiers.org/hmdb/HMDB00538 atp http://identifiers.org/hmdb/HMDB0000538 atp http://identifiers.org/biocyc/META:ATP atp http://identifiers.org/CHEBI:30616 atp http://identifiers.org/CHEBI:57299 atp http://identifiers.org/CHEBI:40938 atp http://identifiers.org/CHEBI:10841 atp http://identifiers.org/CHEBI:10789 atp http://identifiers.org/CHEBI:22249 atp http://identifiers.org/CHEBI:2359 atp http://identifiers.org/CHEBI:13236 atp http://identifiers.org/CHEBI:15422 atp http://identifiers.org/CHEBI:237958 atp http://identifiers.org/metanetx.chemical/MNXM3 atp http://identifiers.org/seed.compound/cpd00002 bpg13 http://identifiers.org/SBO:0000247 bpg13 http://identifiers.org/inchikey/LJQLQCAXBUHEAZ-UWTATZPHSA-N bpg13 http://identifiers.org/vmhmetabolite/13dpg bpg13 http://identifiers.org/bigg.metabolite/13dpg bpg13 http://identifiers.org/kegg.compound/C00236 bpg13 http://identifiers.org/hmdb/HMDB62758 bpg13 http://identifiers.org/hmdb/HMDB0001270 bpg13 http://identifiers.org/biocyc/META:DPG bpg13 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http://identifiers.org/kegg.compound/C00003 nad http://identifiers.org/hmdb/HMDB0000902 nad http://identifiers.org/hmdb/HMDB00902 nad http://identifiers.org/biocyc/META:NAD nad http://identifiers.org/CHEBI:13393 nad http://identifiers.org/CHEBI:21901 nad http://identifiers.org/CHEBI:15846 nad http://identifiers.org/CHEBI:29867 nad http://identifiers.org/CHEBI:7422 nad http://identifiers.org/CHEBI:57540 nad http://identifiers.org/CHEBI:44281 nad http://identifiers.org/CHEBI:44215 nad http://identifiers.org/CHEBI:44214 nad http://identifiers.org/CHEBI:13394 nad http://identifiers.org/metanetx.chemical/MNXM8 nad http://identifiers.org/seed.compound/cpd00003 nadh http://identifiers.org/SBO:0000247 nadh http://identifiers.org/inchikey/BOPGDPNILDQYTO-NNYOXOHSSA-L nadh http://identifiers.org/vmhmetabolite/nadh nadh http://identifiers.org/bigg.metabolite/nadh nadh http://identifiers.org/kegg.compound/C00004 nadh http://identifiers.org/hmdb/HMDB0001487 nadh http://identifiers.org/hmdb/HMDB01487 nadh http://identifiers.org/biocyc/META:NADH nadh http://identifiers.org/CHEBI:57945 nadh http://identifiers.org/CHEBI:21902 nadh http://identifiers.org/CHEBI:44216 nadh http://identifiers.org/CHEBI:7423 nadh http://identifiers.org/CHEBI:13395 nadh http://identifiers.org/CHEBI:13396 nadh http://identifiers.org/CHEBI:16908 nadh http://identifiers.org/metanetx.chemical/MNXM10 nadh http://identifiers.org/seed.compound/cpd00004 pep http://identifiers.org/SBO:0000247 pep http://identifiers.org/inchikey/DTBNBXWJWCWCIK-UHFFFAOYSA-M pep http://identifiers.org/vmhmetabolite/pep pep http://identifiers.org/bigg.metabolite/pep pep http://identifiers.org/kegg.compound/C00074 pep http://identifiers.org/hmdb/HMDB0000263 pep http://identifiers.org/hmdb/HMDB00263 pep http://identifiers.org/biocyc/META:PHOSPHO-ENOL-PYRUVATE pep http://identifiers.org/CHEBI:8147 pep http://identifiers.org/CHEBI:18021 pep http://identifiers.org/CHEBI:44897 pep http://identifiers.org/CHEBI:58702 pep http://identifiers.org/CHEBI:14812 pep http://identifiers.org/CHEBI:26055 pep http://identifiers.org/CHEBI:44894 pep http://identifiers.org/CHEBI:26054 pep http://identifiers.org/metanetx.chemical/MNXM73 pep http://identifiers.org/seed.compound/cpd00061 pg2 http://identifiers.org/SBO:0000247 pg2 http://identifiers.org/inchikey/GXIURPTVHJPJLF-UWTATZPHSA-K pg2 http://identifiers.org/vmhmetabolite/2pg pg2 http://identifiers.org/bigg.metabolite/2pg pg2 http://identifiers.org/kegg.compound/C00631 pg2 http://identifiers.org/hmdb/HMDB03391 pg2 http://identifiers.org/hmdb/HMDB00362 pg2 http://identifiers.org/hmdb/HMDB0003391 pg2 http://identifiers.org/hmdb/HMDB62707 pg2 http://identifiers.org/biocyc/META:2-PG pg2 http://identifiers.org/CHEBI:58289 pg2 http://identifiers.org/CHEBI:39868 pg2 http://identifiers.org/CHEBI:11651 pg2 http://identifiers.org/CHEBI:24344 pg2 http://identifiers.org/CHEBI:17835 pg2 http://identifiers.org/CHEBI:12986 pg2 http://identifiers.org/CHEBI:21028 pg2 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http://identifiers.org/CHEBI:39739 phos http://identifiers.org/CHEBI:43474 phos http://identifiers.org/CHEBI:35780 phos http://identifiers.org/CHEBI:29137 phos http://identifiers.org/metanetx.chemical/MNXM9 phos http://identifiers.org/seed.compound/cpd00009 phos http://identifiers.org/seed.compound/cpd27787 pyr http://identifiers.org/SBO:0000247 pyr http://identifiers.org/inchikey/LCTONWCANYUPML-UHFFFAOYSA-M pyr http://identifiers.org/vmhmetabolite/pyr pyr http://identifiers.org/bigg.metabolite/pyr pyr http://identifiers.org/kegg.compound/C00022 pyr http://identifiers.org/hmdb/HMDB0000243 pyr http://identifiers.org/hmdb/HMDB00243 pyr http://identifiers.org/biocyc/META:PYRUVATE pyr http://identifiers.org/CHEBI:15361 pyr http://identifiers.org/CHEBI:32816 pyr http://identifiers.org/CHEBI:26466 pyr http://identifiers.org/CHEBI:45253 pyr http://identifiers.org/CHEBI:8685 pyr http://identifiers.org/CHEBI:14987 pyr http://identifiers.org/CHEBI:26462 pyr http://identifiers.org/metanetx.chemical/MNXM23 pyr http://identifiers.org/seed.compound/cpd00020 pyr_mito http://identifiers.org/SBO:0000247 pyr_mito http://identifiers.org/inchikey/LCTONWCANYUPML-UHFFFAOYSA-M pyr_mito http://identifiers.org/vmhmetabolite/pyr pyr_mito http://identifiers.org/bigg.metabolite/pyr pyr_mito http://identifiers.org/kegg.compound/C00022 pyr_mito http://identifiers.org/hmdb/HMDB0000243 pyr_mito http://identifiers.org/hmdb/HMDB00243 pyr_mito http://identifiers.org/biocyc/META:PYRUVATE pyr_mito http://identifiers.org/CHEBI:15361 pyr_mito http://identifiers.org/CHEBI:32816 pyr_mito http://identifiers.org/CHEBI:26466 pyr_mito http://identifiers.org/CHEBI:45253 pyr_mito http://identifiers.org/CHEBI:8685 pyr_mito http://identifiers.org/CHEBI:14987 pyr_mito http://identifiers.org/CHEBI:26462 pyr_mito http://identifiers.org/metanetx.chemical/MNXM23 pyr_mito http://identifiers.org/seed.compound/cpd00020 end species annotations begin units end units