begin name leloup4 end name begin reactions reaction0 {1.0}$EXTERNAL = {1.0}species0 reaction1 {1.0}$EXTERNAL = {1.0}species1 reaction10 {1.0}$EXTERNAL = {1.0}species8 reaction11 {1.0}species9 = {1.0}$EXTERNAL reaction12 {1.0}species8 = {1.0}species9 reaction13 {1.0}species4 + {1.0}species8 = {1.0}species10 reaction14 {1.0}species10 = {1.0}species11 reaction15 {1.0}species11 = {1.0}$EXTERNAL reaction16 {1.0}species10 = {1.0}species12 reaction17 {1.0}species14 = {1.0}$EXTERNAL reaction18 {1.0}species2 = {1.0}$EXTERNAL reaction19 {1.0}species13 = {1.0}$EXTERNAL reaction2 {1.0}species0 = {1.0}$EXTERNAL reaction20 {1.0}$EXTERNAL = {1.0}species5 reaction21 {1.0}species12 = {1.0}species14 reaction22 {1.0}species7 = {1.0}$EXTERNAL reaction23 {1.0}species12 + {1.0}species3 = {1.0}species15 reaction24 {1.0}species0 = {1.0}$EXTERNAL reaction25 {1.0}species5 = {1.0}$EXTERNAL reaction26 {1.0}species7 = {1.0}$EXTERNAL reaction27 {1.0}species8 = {1.0}$EXTERNAL reaction28 {1.0}species4 = {1.0}$EXTERNAL reaction29 {1.0}species9 = {1.0}$EXTERNAL reaction3 {1.0}species1 = {1.0}species2 reaction30 {1.0}species6 = {1.0}$EXTERNAL reaction31 {1.0}species11 = {1.0}$EXTERNAL reaction32 {1.0}species10 = {1.0}$EXTERNAL reaction33 {1.0}species14 = {1.0}$EXTERNAL reaction34 {1.0}species1 = {1.0}$EXTERNAL reaction35 {1.0}species2 = {1.0}$EXTERNAL reaction36 {1.0}species3 = {1.0}species13 reaction37 {1.0}species13 = {1.0}$EXTERNAL reaction38 {1.0}species15 = {1.0}$EXTERNAL reaction39 {1.0}species15 = {1.0}$EXTERNAL reaction4 {1.0}species1 = {1.0}species3 reaction40 {1.0}species3 = {1.0}$EXTERNAL reaction41 {1.0}species2 = {1.0}species1 reaction42 {1.0}species13 = {1.0}species3 reaction43 {1.0}species6 = {1.0}species4 reaction44 {1.0}species9 = {1.0}species8 reaction45 {1.0}species14 = {1.0}species12 reaction46 {1.0}species12 = {1.0}$EXTERNAL reaction47 {1.0}species11 = {1.0}species10 reaction5 {1.0}$EXTERNAL = {1.0}species4 reaction6 {1.0}species5 = {1.0}$EXTERNAL reaction7 {1.0}species4 = {1.0}species6 reaction8 {1.0}species6 = {1.0}$EXTERNAL reaction9 {1.0}$EXTERNAL = {1.0}species7 end reactions begin rate equations reaction0 = cell*function0[reaction0vsb, reaction0K, reaction0m, species3[t]] reaction1 = cell*function1[reaction1k, species0[t]] reaction10 = cell*function1[reaction10k, species7[t]] reaction11 = cell*function2[reaction11V, species9[t], reaction11Km] reaction12 = cell*function2[reaction12V, species8[t], reaction12Km] reaction13 = cell*(-(reaction13k2*species10[t]) + reaction13k1*species4[t]*species8[t]) reaction14 = cell*function2[reaction14V, species10[t], reaction14Km] reaction15 = cell*function2[reaction15V, species11[t], reaction15Km] reaction16 = cell*(reaction16k1*species10[t] - reaction16k2*species12[t]) reaction17 = cell*reaction17k1*species14[t] reaction18 = cell*reaction18k1*species2[t] reaction19 = cell*reaction19k1*species13[t] reaction2 = cell*reaction2k1*species0[t] reaction20 = cell*function3[reaction20Vs, species3[t], reaction20n, reaction20K] reaction21 = cell*function2[reaction21V, species12[t], reaction21Km] reaction22 = cell*reaction22k1*species7[t] reaction23 = cell*(-(reaction23k2*species15[t]) + reaction23k1*species12[t]*species3[t]) reaction24 = cell*function2[reaction24V, species0[t], reaction24Km] reaction25 = cell*function2[reaction25V, species5[t], reaction25Km] reaction26 = cell*function2[reaction26V, species7[t], reaction26Km] reaction27 = cell*reaction27k1*species8[t] reaction28 = cell*reaction28k1*species4[t] reaction29 = cell*reaction29k1*species9[t] reaction3 = cell*function2[reaction3V, species1[t], reaction3Km] reaction30 = cell*reaction30k1*species6[t] reaction31 = cell*reaction31k1*species11[t] reaction32 = cell*reaction32k1*species10[t] reaction33 = cell*function2[reaction33V, species14[t], reaction33Km] reaction34 = cell*reaction34k1*species1[t] reaction35 = cell*function2[reaction35V, species2[t], reaction35Km] reaction36 = cell*function2[reaction36V, species3[t], reaction36Km] reaction37 = cell*function2[reaction37V, species13[t], reaction37Km] reaction38 = cell*reaction38k1*species15[t] reaction39 = cell*function2[reaction39V, species15[t], reaction39Km] reaction4 = cell*(reaction4k1*species1[t] - reaction4k2*species3[t]) reaction40 = cell*reaction40k1*species3[t] reaction41 = cell*function2[reaction41V, species2[t], reaction41Km] reaction42 = cell*function2[reaction42V, species13[t], reaction42Km] reaction43 = cell*function2[reaction43V, species6[t], reaction43Km] reaction44 = cell*function2[reaction44V, species9[t], reaction44Km] reaction45 = cell*function2[reaction45V, species14[t], reaction45Km] reaction46 = cell*reaction46k1*species12[t] reaction47 = cell*function2[reaction47V, species11[t], reaction47Km] reaction5 = cell*function1[reaction5k, species5[t]] reaction6 = cell*reaction6k1*species5[t] reaction7 = cell*function2[reaction7V, species4[t], reaction7Km] reaction8 = cell*function2[reaction8V, species6[t], reaction8Km] reaction9 = cell*function3[parameter0000082, species3[t], reaction9n, reaction9K] end rate equations begin parameters reaction0vsb = 1.0 reaction0K = 2.2 reaction0m = 2.0 reaction1k = 0.12 reaction7V = 0.6 reaction2k1 = 0.01 reaction3V = 0.5 reaction3Km = 0.1 reaction4k1 = 0.4 reaction4k2 = 0.2 reaction5k = 1.6 reaction6k1 = 0.01 reaction7Km = 0.1 reaction8V = 0.7 reaction8Km = 0.3 reaction9n = 4.0 reaction9K = 0.7 reaction10k = 0.6 reaction11V = 0.7 reaction11Km = 0.3 reaction15V = 0.7 reaction15Km = 0.3 reaction16k1 = 0.4 reaction16k2 = 0.2 reaction17k1 = 0.01 reaction18k1 = 0.01 reaction19k1 = 0.01 reaction20Vs = 1.1 reaction20n = 4.0 reaction20K = 0.6 reaction21V = 0.4 reaction21Km = 0.1 reaction22k1 = 0.01 reaction23k1 = 0.5 reaction23k2 = 0.1 reaction24V = 0.8 reaction24Km = 0.4 reaction25V = 1.0 reaction25Km = 0.4 reaction26V = 1.1 reaction26Km = 0.31 reaction27k1 = 0.01 reaction28k1 = 0.12 reaction29k1 = 0.01 reaction30k1 = 0.01 reaction31k1 = 0.01 reaction32k1 = 0.01 reaction33V = 0.7 reaction33Km = 0.3 reaction34k1 = 0.01 reaction35V = 0.5 reaction35Km = 0.3 reaction36V = 0.5 reaction36Km = 0.1 reaction37V = 0.6 reaction37Km = 0.3 reaction38k1 = 0.01 reaction39V = 0.8 reaction39Km = 0.3 reaction40k1 = 0.01 reaction41V = 0.1 reaction41Km = 0.1 reaction42V = 0.2 reaction42Km = 0.1 reaction43V = 0.1 reaction43Km = 0.1 reaction44V = 0.3 reaction44Km = 0.1 reaction45V = 0.1 reaction45Km = 0.1 reaction46k1 = 0.01 reaction47V = 0.1 reaction47Km = 0.1 reaction12V = 0.4 reaction12Km = 0.1 reaction13k1 = 0.4 reaction13k2 = 0.2 reaction14V = 0.4 reaction14Km = 0.1 cell = 1.0 end parameters begin initial conditions species0[0] = species0i species1[0] = species1i species10[0] = species10i species11[0] = species11i species12[0] = species12i species13[0] = species13i species14[0] = species14i species15[0] = species15i species2[0] = species2i species3[0] = species3i species4[0] = species4i species5[0] = species5i species6[0] = species6i species7[0] = species7i species8[0] = species8i species9[0] = species9i end initial conditions begin initial values species0i = 9.5 species1i = 2.0 species10i = 0.0 species11i = 0.0 species12i = 1.0 species13i = 0.0 species14i = 0.0 species15i = 0.0 species2i = 0.0 species3i = 1.9 species4i = 0.0 species5i = 1.7 species6i = 0.0 species7i = 2.5 species8i = 0.0 species9i = 0.0 end initial values begin assignment rules parameter0000082 := 1.5 + 0.30000000000000004*functionDefinition0000005[12] parameter0000081 := functionDefinition0000005[12] end assignment rules begin function definitions functionDefinition0000005[length_] := Ceiling[Sin[0.001 + (Pi*t)/length]/2] function0[vsb_,K_,m_,Bn_] := (K^m*vsb)/(Bn^m + K^m) function1[k_,mRNA_] := k*mRNA function2[V_,substrate_,Km_] := (substrate*V)/(Km + substrate) function3[Vs_,B_,n_,K_] := (B^n*Vs)/(B^n + K^n) end function definitions begin events end events begin process annotations reaction_9 http://identifiers.org/obo.go/GO:0045893 end process annotations begin species annotations end species annotations begin units end units