(* Generated by JWS Online *)

(* This is an experimental feature of JWS Online. Please report any mistakes.*)

(* Note that the following notable SBML entities or features are not supported in notebook outputyet: *)
    (* Events *)
    (* Constraints *)
    (* Units and UnitDefinitions *)
    (* AlgebraicRules *)
    (* conversionFactors *)

variables = {
species\[LetterSpace]0000001[t], species\[LetterSpace]0000002[t], species\[LetterSpace]0000006[t], species\[LetterSpace]0000007[t], species\[LetterSpace]0000008[t], species\[LetterSpace]0000009[t], species\[LetterSpace]0000011[t], species\[LetterSpace]0000016[t], species\[LetterSpace]0000017[t]
};

initialValues = {
species\[LetterSpace]0000001[0] == 0.0, species\[LetterSpace]0000002[0] == 5*^-06, species\[LetterSpace]0000006[0] == 0.0, species\[LetterSpace]0000007[0] == 0.0, species\[LetterSpace]0000008[0] == 0.0, species\[LetterSpace]0000009[0] == 0.0, species\[LetterSpace]0000011[0] == 0.0, species\[LetterSpace]0000016[0] == 1*^-05, species\[LetterSpace]0000017[0] == 1*^-05
};

rates = {
fast, reaction\[LetterSpace]0, reaction\[LetterSpace]0000001, reaction\[LetterSpace]1, reaction\[LetterSpace]10, reaction\[LetterSpace]11, reaction\[LetterSpace]12, reaction\[LetterSpace]13, reaction\[LetterSpace]14, reaction\[LetterSpace]2, reaction\[LetterSpace]3, reaction\[LetterSpace]4, reaction\[LetterSpace]5, reaction\[LetterSpace]6, reaction\[LetterSpace]7, reaction\[LetterSpace]8, reaction\[LetterSpace]9
};

rateEquations = {
fast -> compartment\[LetterSpace]0000001*HO2star*k10, reaction\[LetterSpace]0 -> compartment\[LetterSpace]0000001*k2*species\[LetterSpace]0000001[t]*species\[LetterSpace]0000002[t], reaction\[LetterSpace]0000001 -> compartment\[LetterSpace]0000001*k1, reaction\[LetterSpace]1 -> compartment\[LetterSpace]0000001*Cu\[LetterSpace]I\[LetterSpace]ZnSOD*k3*species\[LetterSpace]0000001[t], reaction\[LetterSpace]10 -> compartment\[LetterSpace]0000001*Cu\[LetterSpace]I\[LetterSpace]ZnSOD*k13a, reaction\[LetterSpace]11 -> compartment\[LetterSpace]0000001*k13b*species\[LetterSpace]0000002[t], reaction\[LetterSpace]12 -> compartment\[LetterSpace]0000001*k17*species\[LetterSpace]0000011[t], reaction\[LetterSpace]13 -> compartment\[LetterSpace]0000001*k18*species\[LetterSpace]0000007[t], reaction\[LetterSpace]14 -> compartment\[LetterSpace]0000001*k19*species\[LetterSpace]0000007[t]^2, reaction\[LetterSpace]2 -> compartment\[LetterSpace]0000001*k4*species\[LetterSpace]0000001[t]*species\[LetterSpace]0000007[t], reaction\[LetterSpace]3 -> compartment\[LetterSpace]0000001*k5*species\[LetterSpace]0000001[t]*species\[LetterSpace]0000006[t], reaction\[LetterSpace]4 -> compartment\[LetterSpace]0000001*k6*species\[LetterSpace]0000002[t]*species\[LetterSpace]0000006[t], reaction\[LetterSpace]5 -> compartment\[LetterSpace]0000001*k7*species\[LetterSpace]0000006[t]*species\[LetterSpace]0000017[t], reaction\[LetterSpace]6 -> compartment\[LetterSpace]0000001*k9*species\[LetterSpace]0000008[t], reaction\[LetterSpace]7 -> compartment\[LetterSpace]0000001*HO2star*k10, reaction\[LetterSpace]8 -> compartment\[LetterSpace]0000001*k11*species\[LetterSpace]0000008[t], reaction\[LetterSpace]9 -> compartment\[LetterSpace]0000001*k12*species\[LetterSpace]0000009[t]
};

parameters = {
k1 -> 6.6*^-07, k10 -> 1000.0, k11 -> 250000000.0, k12 -> 0.38, k13a -> 0.0087, k13b -> 0.0087, k17 -> 30000.0, k18 -> 7.0, k19 -> 88000.0, k2 -> 1600000000.0, k3 -> 1600000000.0, k4 -> 100000.0, k5 -> 20000.0, k6 -> 1.0, k7 -> 34000000.0, k9 -> 1000000.0, compartment\[LetterSpace]0000001 -> 1.0
};

assignments = {
Cu\[LetterSpace]I\[LetterSpace]ZnSOD -> -species\[LetterSpace]0000002[t] + species\[LetterSpace]0000016[t], HO2star -> species\[LetterSpace]0000001[t]/100
};

events = {

};

speciesAnnotations = {
species\[LetterSpace]0000001[t]->"http://identifiers.org/chebi/CHEBI:18421", species\[LetterSpace]0000001[t]->"http://identifiers.org/kegg.compound/C00704", species\[LetterSpace]0000006[t]->"http://identifiers.org/chebi/CHEBI:16240", species\[LetterSpace]0000006[t]->"http://identifiers.org/kegg.compound/C00027", species\[LetterSpace]0000008[t]->"http://identifiers.org/chebi/CHEBI:29191", species\[LetterSpace]0000009[t]->"http://identifiers.org/kegg.compound/C01025", species\[LetterSpace]0000009[t]->"http://identifiers.org/chebi/CHEBI:61051"
};

reactionAnnotations = {

};

units = {
{"time" -> "", "metabolite" -> "", "extent" -> ""}
};

(* Time evolution *)
odes = {
species\[LetterSpace]0000001'[t] == 1.0*reaction\[LetterSpace]0000001 -1.0*reaction\[LetterSpace]0 -1.0*reaction\[LetterSpace]1 -1.0*reaction\[LetterSpace]2 -1.0*reaction\[LetterSpace]3 -1.0*fast, species\[LetterSpace]0000002'[t] == 1.0*reaction\[LetterSpace]1 +1.0*reaction\[LetterSpace]10 -1.0*reaction\[LetterSpace]0 -1.0*reaction\[LetterSpace]11, species\[LetterSpace]0000006'[t] == 1.0*reaction\[LetterSpace]1 +1.0*reaction\[LetterSpace]7 -1.0*reaction\[LetterSpace]3 -1.0*reaction\[LetterSpace]4 -1.0*reaction\[LetterSpace]5, species\[LetterSpace]0000007'[t] == 1.0*reaction\[LetterSpace]12 -1.0*reaction\[LetterSpace]2 -1.0*reaction\[LetterSpace]13 -2.0*reaction\[LetterSpace]14, species\[LetterSpace]0000008'[t] == 2.0*reaction\[LetterSpace]3 +2.0*reaction\[LetterSpace]4 -1.0*reaction\[LetterSpace]6 -1.0*reaction\[LetterSpace]8, species\[LetterSpace]0000009'[t] == 1.0*reaction\[LetterSpace]2 +1.0*reaction\[LetterSpace]13 -1.0*reaction\[LetterSpace]9, species\[LetterSpace]0000011'[t] == 1.0*reaction\[LetterSpace]7 +1.0*reaction\[LetterSpace]8 +1.0*reaction\[LetterSpace]13 -1.0*reaction\[LetterSpace]12, species\[LetterSpace]0000016'[t] == 0.0 , species\[LetterSpace]0000017'[t] == 0.0 
};
timeCourse = NDSolve[Join[odes, initialValues]//.rateEquations//.assignments//.parameters, variables, {t, 0, 100}];

(* Steady-state solution initialized with result of time evolution *)
findRootEquations = odes /.D[_[t],t]->0;
findRootVariables = Partition[Flatten[{#, #/.timeCourse/.t->100} &/@variables],2];
steadyStateVariables = FindRoot[findRootEquations//.rateEquations//.assignments//.parameters, findRootVariables, MaxIterations->100]
fluxes = #//.assignments//.parameters/.steadyStateVariables&/@rateEquations

(* Plot the time evolution of the variables *)
plotTable=Table[Plot[variables[[i]]/.parameters/.timeCourse,{t,0,100},PlotLegends->variables[[i]],PlotRange->Full],{i,Length[variables]}]