#kouril7 FIX: GA #reactions v1: {1.0}ATP + {1.0}P3G = {1.0}ADP + {1.0}BPG -(VmPGK * (KeqPGK * BPG * ADP - ATP * P3G)) / (KmPGKATP * KmPGKP3G * (1 + ADP / KmPGKADP + ATP / KmPGKATP) * (1 + BPG / KmPGKBPG + P3G / KmPGKP3G)) v2: {1.0}ADP + {1.0}pep = {1.0}ATP + {1.0}pyr kPK * ADP * pep v4: {1.0}NADH + {1.0}BPG = {1.0}NAD + {1.0}gap -(-(VmGAPDHr * BPG * NADH / (KmGAPDHBPG * KmGAPDHNADH)) + VmGAPDHf * NAD * gap / (KmGAPDHGAP * KmGAPDHNAD)) / ((1 + NAD / KmGAPDHNAD + NADH / KmGAPDHNADH) * (1 + BPG / KmGAPDHBPG + gap / KmGAPDHGAP)) v5: {1.0}NAD + {1.0}Glc = {1.0}NADH + {1.0}GA kGDH * Glc * NAD #parameters KeqPGK = 3200.0 KmGAPDHBPG = 0.0098 KmGAPDHGAP = 0.21 KmGAPDHNAD = 0.09 KmGAPDHNADH = 0.06 KmPGKADP = 0.2 KmPGKATP = 0.3 KmPGKBPG = 0.003 KmPGKP3G = 0.53 VmGAPDHf = 0.188086 VmGAPDHr = 1.04 VmPGK = 0.038 kGDH = 10.0 kPK = 10.0 GA = 0.0 default = 1.0 #initial values ADP = 0.0 ATP = 10.0 BPG = 0.0 Glc = 10.0 NAD = 0.0 NADH = 0.2 P3G = 3.0 gap = 0.365 pep = 10.0 pyr = 0.15 #assignment rules