begin name kouril7 end name begin reactions v1 {1.0}ATP + {1.0}P3G = {1.0}ADP + {1.0}BPG v2 {1.0}ADP + {1.0}pep = {1.0}ATP + {1.0}pyr v4 {1.0}NADH + {1.0}BPG = {1.0}NAD + {1.0}gap v5 {1.0}NAD + {1.0}Glc = {1.0}NADH + {1.0}$GA end reactions begin rate equations v1 = -((VmPGK*(KeqPGK*ADP[t]*BPG[t] - ATP[t]*P3G[t]))/(KmPGKATP*KmPGKP3G*(1 + ADP[t]/KmPGKADP + ATP[t]/KmPGKATP)*(1 + BPG[t]/KmPGKBPG + P3G[t]/KmPGKP3G))) v2 = kPK*ADP[t]*pep[t] v4 = -(((VmGAPDHf*gap[t]*NAD[t])/(KmGAPDHGAP*KmGAPDHNAD) - (VmGAPDHr*BPG[t]*NADH[t])/(KmGAPDHBPG*KmGAPDHNADH))/((1 + BPG[t]/KmGAPDHBPG + gap[t]/KmGAPDHGAP)*(1 + NAD[t]/KmGAPDHNAD + NADH[t]/KmGAPDHNADH))) v5 = kGDH*Glc[t]*NAD[t] end rate equations begin parameters KeqPGK = 3200.0 KmGAPDHBPG = 0.0098 KmGAPDHGAP = 0.21 KmGAPDHNAD = 0.09 KmGAPDHNADH = 0.06 KmPGKADP = 0.2 KmPGKATP = 0.3 KmPGKBPG = 0.003 KmPGKP3G = 0.53 VmGAPDHf = 0.188086 VmGAPDHr = 1.04 VmPGK = 0.038 kGDH = 10.0 kPK = 10.0 GA = 0.0 default = 1.0 end parameters begin initial conditions ADP[0] = ADPi ATP[0] = ATPi BPG[0] = BPGi Glc[0] = Glci NAD[0] = NADi NADH[0] = NADHi P3G[0] = P3Gi gap[0] = gapi pep[0] = pepi pyr[0] = pyri end initial conditions begin initial values ADPi = 0.0 ATPi = 10.0 BPGi = 0.0 Glci = 10.0 NADi = 0.0 NADHi = 0.2 P3Gi = 3.0 gapi = 0.365 pepi = 10.0 pyri = 0.15 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units