(* Generated by JWS Online *) (* This is an experimental feature of JWS Online. Please report any mistakes.*) (* Note that the following notable SBML entities or features are not supported in notebook outputyet: *) (* Events *) (* Constraints *) (* Units and UnitDefinitions *) (* AlgebraicRules *) (* conversionFactors *) variables = { s1[t], s10[t], s100[t], s101[t], s102[t], s103[t], s104[t], s105[t], s106[t], s107[t], s108[t], s11[t], s110[t], s111[t], s112[t], s113[t], s114[t], s115[t], s116[t], s117[t], s118[t], s119[t], s12[t], s13[t], s14[t], s15[t], s16[t], s17[t], s18[t], s19[t], s2[t], s20[t], s21[t], s22[t], s23[t], s24[t], s25[t], s26[t], s27[t], s28[t], s3[t], s35[t], s37[t], s38[t], s39[t], s4[t], s42[t], s43[t], s44[t], s45[t], s47[t], s48[t], s49[t], s5[t], s50[t], s51[t], s52[t], s57[t], s58[t], s6[t], s60[t], s61[t], s62[t], s63[t], s64[t], s65[t], s66[t], s7[t], s8[t], s9[t], s91[t], s92[t], s93[t], s94[t], s95[t], s96[t], s97[t], s98[t], s99[t] }; initialValues = { s1[0] == 1500000.0, s10[0] == 0.0, s100[0] == 0.288, s101[0] == 1.486, s102[0] == 0.616, s103[0] == 119.384, s104[0] == 0.003, s105[0] == 0.0, s106[0] == 3.214, s107[0] == 0.0, s108[0] == 0.0, s11[0] == 0.0, s110[0] == 0.857, s111[0] == 3.23, s112[0] == 15.962, s113[0] == 5.577, s114[0] == 1.193, s115[0] == 0.09, s116[0] == 0.0, s117[0] == 0.0, s118[0] == 0.0, s119[0] == 0.0, s12[0] == 0.0, s13[0] == 0.0, s14[0] == 0.246, s15[0] == 150.0, s16[0] == 167.616, s17[0] == 0.345, s18[0] == 0.1, s19[0] == 6967.271, s2[0] == 2830000.0, s20[0] == 0.03, s21[0] == 0.0, s22[0] == 99.97, s23[0] == 0.0, s24[0] == 3.0, s25[0] == 999.754, s26[0] == 1.457, s27[0] == 1.723, s28[0] == 29.203, s3[0] == 117.2, s35[0] == 0.0, s37[0] == 10000.0, s38[0] == 0.0, s39[0] == 0.0, s4[0] == 3870.0, s42[0] == 50.0, s43[0] == 0.006, s44[0] == 0.0, s45[0] == 0.0415, s47[0] == 2.827, s48[0] == 347.52, s49[0] == 10.0, s5[0] == 0.0, s50[0] == 2.12, s51[0] == 34.98, s52[0] == 7635.36, s57[0] == 199987.0, s58[0] == 1.037, s6[0] == 0.0, s60[0] == 0.0089, s61[0] == 10.98, s62[0] == 0.106, s63[0] == 500000.0, s64[0] == 0.0, s65[0] == 0.643, s66[0] == 0.083, s7[0] == 0.0, s8[0] == 0.0, s9[0] == 0.0, s91[0] == 819.25, s92[0] == 18.0, s93[0] == 0.605, s94[0] == 72.0, s95[0] == 57.0, s96[0] == 299.706, s97[0] == 98.514, s98[0] == 157.162, s99[0] == 299.997 }; rates = { re10, re102, re103, re104, re105, re106, re107, re108, re109, re11, re110, re111, re112, re113, re114, re115, re116, re117, re118, re119, re12, re120, re121, re122, re123, re124, re125, re126, re127, re128, re129, re131, re132, re133, re134, re135, re136, re137, re138, re139, re3, re37, re38, re4, re41, re42, re5, re50, re51, re52, re53, re54, re55, re56, re57, re58, re59, re6, re60, re61, re62, re63, re64, re65, re66, re67, re68, re69, re7, re70, re71, re72, re8, re9 }; rateEquations = { re10 -> 0.5*dot\[LetterSpace]q\[LetterSpace]inpass, re102 -> (E^(re102\[LetterSpace]unity - (s39[t]/re102\[LetterSpace]tf)^0.35)*re102\[LetterSpace]normal*(re102\[LetterSpace]unity - (s39[t]/re102\[LetterSpace]tf)^0.35))/((re102\[LetterSpace]tiny\[LetterSpace]num + s39[t])/re102\[LetterSpace]unimol)^0.65, re103 -> E^(re103\[LetterSpace]unity - (s39[t]/re103\[LetterSpace]tf)^1.3)*re103\[LetterSpace]normal*(s39[t]/re103\[LetterSpace]unimol)^0.3*(re103\[LetterSpace]unity - (s39[t]/re103\[LetterSpace]tf)^1.3), re104 -> -(re104\[LetterSpace]k\[LetterSpace]105*s110[t]) + re104\[LetterSpace]k105*s91[t]*s93[t], re105 -> -(re105\[LetterSpace]k\[LetterSpace]6*s112[t]) + re105\[LetterSpace]kcat\[LetterSpace]src*s110[t]*s92[t], re106 -> re106\[LetterSpace]k107*s111[t]*s112[t] - re106\[LetterSpace]k\[LetterSpace]107*s113[t], re107 -> re107\[LetterSpace]k108*s113[t] - re107\[LetterSpace]k\[LetterSpace]108*s114[t]*s93[t], re108 -> (re108\[LetterSpace]V10*s98[t])/(re108\[LetterSpace]K10 + s98[t]), re109 -> re109\[LetterSpace]k9*s114[t], re11 -> 0.5*re11\[LetterSpace]unisec, re110 -> re110\[LetterSpace]kT*s115[t], re111 -> re111\[LetterSpace]ktr1*s107[t] + re111\[LetterSpace]ktr1k2*s49[t], re112 -> (re112\[LetterSpace]k111*s103[t]*s114[t])/(re112\[LetterSpace]K111 + s103[t]), re113 -> (re113\[LetterSpace]V12*s102[t])/(re113\[LetterSpace]K12 + s102[t]), re114 -> (re114\[LetterSpace]k113*s102[t]*s97[t])/(re114\[LetterSpace]K113 + s97[t]), re115 -> (re115\[LetterSpace]V18*s101[t])/(re115\[LetterSpace]K18 + s101[t]), re116 -> (re116\[LetterSpace]k19*s101[t]*s96[t])/(re116\[LetterSpace]K19 + s96[t]), re117 -> (re117\[LetterSpace]V20*s100[t])/(re117\[LetterSpace]K20 + s100[t]), re118 -> (re118\[LetterSpace]k21*s43[t]*s99[t])/(re118\[LetterSpace]K21 + s99[t]), re119 -> (re119\[LetterSpace]V22*s104[t])/(re119\[LetterSpace]K22 + s104[t]), re12 -> (0.5*dot\[LetterSpace]Vp*s3[t]^2)/(K4^2 + s3[t]^2), re120 -> re120\[LetterSpace]kD*s106[t], re121 -> (re121\[LetterSpace]kP*s106[t])/(re121\[LetterSpace]K30 + s106[t]), re122 -> re122\[LetterSpace]unitime, re123 -> (re123\[LetterSpace]V37*s43[t])/(re123\[LetterSpace]K37 + s43[t]), re124 -> (re124\[LetterSpace]k38*s100[t]*s101[t])/(re124\[LetterSpace]K38 + s100[t]), re125 -> (re125\[LetterSpace]V39*s44[t])/(re125\[LetterSpace]K39 + s44[t]), re126 -> (re126\[LetterSpace]k40*s104[t]*s43[t])/(re126\[LetterSpace]K40 + s104[t]), re127 -> (re127\[LetterSpace]k43*s42[t]*s44[t])/(re127\[LetterSpace]K43 + s42[t]), re128 -> (re128\[LetterSpace]V44*s107[t])/(re128\[LetterSpace]K44 + s107[t]), re129 -> (29.256*E^(re129\[LetterSpace]tau*(re129\[LetterSpace]delay - s39[t]/re129\[LetterSpace]tc)))/((1 + 2*E^(re129\[LetterSpace]tau*(re129\[LetterSpace]delay - s39[t]/re129\[LetterSpace]tc)) + E^(2*re129\[LetterSpace]tau*(re129\[LetterSpace]delay - s39[t]/re129\[LetterSpace]tc)))*re129\[LetterSpace]uc), re131 -> kDD*s51[t], re132 -> kDD*s45[t], re133 -> kDD*s50[t], re134 -> kDD*s66[t], re135 -> kDD*s65[t], re136 -> kDD*s61[t], re137 -> kDD*s62[t], re138 -> kDD*s58[t], re139 -> kDD*s60[t], re3 -> -(k6*s3[t]*(B\[LetterSpace]T - s4[t])) + k7*s4[t], re37 -> k15*s47[t]*s51[t], re38 -> -(k18*s50[t]) + k17*s48[t]*s51[t], re4 -> k\[LetterSpace]CCE*((Cao*fracK)/(Cao + K3) - s2[t])*(s1[t] - s2[t]), re41 -> -(k12*s48[t]) + k11*s3[t]*s52[t], re42 -> -(k14*s47[t]) + k13*s3[t]*s48[t], re5 -> (0.5*k1*(R\[LetterSpace]T - half*R\[LetterSpace]T*(E^(-(s12[t]/tau\[LetterSpace]I)) + E^(-(s12[t]/tau\[LetterSpace]II)) + ((E^(-(s12[t]/tau\[LetterSpace]I)) - E^(-(s12[t]/tau\[LetterSpace]II)))*(tau\[LetterSpace]I + tau\[LetterSpace]II))/(tau\[LetterSpace]I - tau\[LetterSpace]II)))*s3[t])/(K1 + s3[t]), re50 -> gam*k14*s45[t] - k13*s3[t]*s50[t], re51 -> k90*s45[t]*s57[t], re52 -> gam*k14*s58[t] - k13*s3[t]*s61[t], re53 -> kr90*s61[t], re54 -> gam*k14*s60[t] - k13*s3[t]*s62[t], re55 -> (kp*s27[t]*s58[t])/(Kmp + s58[t]) - (Vdp*s60[t])/(Kmdp + s60[t]), re56 -> (kp*s27[t]*s61[t])/(Kmp + s61[t]) - (Vdp*s62[t])/(Kmdp + s62[t]), re57 -> E^(re57\[LetterSpace]unity - (s23[t]/re57\[LetterSpace]tf)^1.8)*re57\[LetterSpace]normal*(s23[t]/re57\[LetterSpace]unimol)^0.8*(re57\[LetterSpace]unity - (s23[t]/re57\[LetterSpace]tf)^1.8), re58 -> (re58\[LetterSpace]k58*s19[t]*s20[t])/(re58\[LetterSpace]Km58 + s19[t]), re59 -> (re59\[LetterSpace]k59*s17[t]*s18[t])/(re59\[LetterSpace]Km59 + s17[t]), re6 -> 0.5*k2*s6[t], re60 -> re60\[LetterSpace]k60*s16[t]*s17[t] - re60\[LetterSpace]kr60*s28[t], re61 -> (re61\[LetterSpace]k61*s14[t]*s28[t])/(re61\[LetterSpace]Km61 + s28[t]), re62 -> (re62\[LetterSpace]k62*s24[t]*s26[t])/(re62\[LetterSpace]Km62 + s26[t]), re63 -> (re63\[LetterSpace]k63*s15[t]*s26[t])/(re63\[LetterSpace]Km63 + s26[t]), re64 -> (re64\[LetterSpace]k64*s15[t]*s27[t])/(re64\[LetterSpace]Km64 + s27[t]), re65 -> (re65\[LetterSpace]k65*s15[t]*s27[t])/(re65\[LetterSpace]Km65 + s27[t]), re66 -> re66\[LetterSpace]k66*s17[t]*s25[t], re67 -> re67\[LetterSpace]k67*s14[t], re68 -> re68\[LetterSpace]unitime, re69 -> re69\[LetterSpace]K\[LetterSpace]cam\[LetterSpace]no*(s45[t] + s58[t]) + re69\[LetterSpace]K\[LetterSpace]pcam\[LetterSpace]no*s60[t] + re69\[LetterSpace]K\[LetterSpace]p\[LetterSpace]no*(s62[t] + s65[t]), re7 -> 0.5*k5*s2[t]^2 - (0.5*k4*s3[t]^2)/(K3 + s3[t])^2 + (0.5*k3*k\[LetterSpace]CICR*s2[t]*s3[t]*s6[t]^3)/((K\[LetterSpace]CICR + s3[t])*(K2 + s6[t])^3), re70 -> (Vdp*s65[t])/(Kmdp + s65[t]), re71 -> kr90*s66[t], re72 -> k18*s62[t] - k17*s48[t]*s65[t], re8 -> (0.5*dot\[LetterSpace]Vhi*s3[t]^4)/(K\[LetterSpace]hi^4 + s3[t]^4), re9 -> (0.5*dot\[LetterSpace]Vex*s3[t])/(K5 + s3[t]) }; parameters = { B\[LetterSpace]T -> 120000.0, Cao -> 100.0, K1 -> 0.0, K2 -> 200.0, K3 -> 150.0, K4 -> 80.0, K5 -> 321.0, K\[LetterSpace]CICR -> 0.0, K\[LetterSpace]hi -> 380.0, Kmdp -> 20.0, Kmp -> 5.0, R\[LetterSpace]T -> 44000.0, Vc\[LetterSpace]Vs -> 3.5, Vdp -> 4.0, alp -> 10.0, dot\[LetterSpace]Vex -> 18330.0, dot\[LetterSpace]Vhi -> 4760.0, dot\[LetterSpace]Vp -> 1630.0, dot\[LetterSpace]q\[LetterSpace]inpass -> 6000.0, dot\[LetterSpace]q\[LetterSpace]instim -> 2500.0, fracK -> 7071067.81, gam -> 0.1, half -> 0.5, k1 -> 0.0012, k11 -> 0.004, k12 -> 10.3, k13 -> 0.08, k14 -> 1152.0, k15 -> 0.015, k16 -> 0.0, k17 -> 0.00015, k18 -> 1.5, k2 -> 2.0, k3 -> 6.64, k4 -> 5000.0, k5 -> 1*^-10, k6 -> 0.1, k7 -> 300.0, k8 -> 7.5*^-05, k90 -> 0.002, kDD -> 9.45*^-05, k\[LetterSpace]CCE -> 0.0, k\[LetterSpace]CICR -> 1.0, kp -> 0.1, kr90 -> 1.5, tau\[LetterSpace]I -> 33.0, tau\[LetterSpace]II -> 0.005, re11\[LetterSpace]unisec -> 1.0, re57\[LetterSpace]normal -> 0.907, re57\[LetterSpace]unity -> 1.0, re57\[LetterSpace]unimol -> 1.0, re57\[LetterSpace]tf -> 15.0, re58\[LetterSpace]k58 -> 0.2, re58\[LetterSpace]Km58 -> 6170.0, re59\[LetterSpace]k59 -> 7.5, re59\[LetterSpace]Km59 -> 80.9, re60\[LetterSpace]k60 -> 0.045, re60\[LetterSpace]kr60 -> 0.089, re61\[LetterSpace]k61 -> 20.0, re61\[LetterSpace]Km61 -> 80000.0, re62\[LetterSpace]k62 -> 20.0, re62\[LetterSpace]Km62 -> 80000.0, re63\[LetterSpace]k63 -> 0.037, re63\[LetterSpace]Km63 -> 8800.0, re64\[LetterSpace]k64 -> 0.04, re64\[LetterSpace]Km64 -> 48000.0, re65\[LetterSpace]k65 -> 0.163, re65\[LetterSpace]Km65 -> 48000.0, re66\[LetterSpace]k66 -> 0.0007, re67\[LetterSpace]k67 -> 0.98, re68\[LetterSpace]unitime -> 1.0, re69\[LetterSpace]K\[LetterSpace]cam\[LetterSpace]no -> 17.0, re69\[LetterSpace]K\[LetterSpace]p\[LetterSpace]no -> 5.0, re69\[LetterSpace]K\[LetterSpace]pcam\[LetterSpace]no -> 17.0, re102\[LetterSpace]normal -> 4.0, re102\[LetterSpace]tf -> 60.0, re102\[LetterSpace]unity -> 1.0, re102\[LetterSpace]unimol -> 1.0, re102\[LetterSpace]tiny\[LetterSpace]num -> 1*^-06, re103\[LetterSpace]normal -> 0.026, re103\[LetterSpace]tf -> 540.0, re103\[LetterSpace]unity -> 1.0, re103\[LetterSpace]unimol -> 1.0, re104\[LetterSpace]k105 -> 0.1, re104\[LetterSpace]k\[LetterSpace]105 -> 1.0, re105\[LetterSpace]kcat\[LetterSpace]src -> 8.33, re105\[LetterSpace]k\[LetterSpace]6 -> 5.0, re106\[LetterSpace]k107 -> 60.0, re106\[LetterSpace]k\[LetterSpace]107 -> 546.0, re107\[LetterSpace]k108 -> 2040.0, re107\[LetterSpace]k\[LetterSpace]108 -> 15700.0, re108\[LetterSpace]V10 -> 154.0, re108\[LetterSpace]K10 -> 340.0, re109\[LetterSpace]k9 -> 40.8, re110\[LetterSpace]kT -> 0.001, re111\[LetterSpace]ktr1 -> 0.00012, re111\[LetterSpace]ktr1k2 -> 9*^-06, re111\[LetterSpace]tr2 -> 3*^-06, re112\[LetterSpace]k111 -> 0.222, re112\[LetterSpace]K111 -> 0.181, re113\[LetterSpace]V12 -> 0.289, re113\[LetterSpace]K12 -> 0.0571, re114\[LetterSpace]k113 -> 0.035, re114\[LetterSpace]K113 -> 10.0, re115\[LetterSpace]K18 -> 8.0, re115\[LetterSpace]V18 -> 0.125, re116\[LetterSpace]k19 -> 0.005, re116\[LetterSpace]K19 -> 15.0, re117\[LetterSpace]K20 -> 15.0, re117\[LetterSpace]V20 -> 0.375, re118\[LetterSpace]k21 -> 0.002, re118\[LetterSpace]K21 -> 30.0, re119\[LetterSpace]K22 -> 15.0, re119\[LetterSpace]V22 -> 0.05, re120\[LetterSpace]kD -> 2.8*^-05, re121\[LetterSpace]kP -> 0.02824, re121\[LetterSpace]K30 -> 16.0, re122\[LetterSpace]unitime -> 1.0, re123\[LetterSpace]V37 -> 0.375, re123\[LetterSpace]K37 -> 15.0, re124\[LetterSpace]k38 -> 0.005, re124\[LetterSpace]K38 -> 15.0, re125\[LetterSpace]V39 -> 0.05, re125\[LetterSpace]K39 -> 15.0, re126\[LetterSpace]k40 -> 0.002, re126\[LetterSpace]K40 -> 30.0, re127\[LetterSpace]K43 -> 25.0, re127\[LetterSpace]k43 -> 4*^-05, re128\[LetterSpace]K44 -> 5.0, re128\[LetterSpace]V44 -> 0.002, re129\[LetterSpace]tau -> 0.55, re129\[LetterSpace]tc -> 3600.0, re129\[LetterSpace]uc -> 3600.0, re129\[LetterSpace]delay -> 5.0, re129\[LetterSpace]unity -> 20.0, c1 -> 1.0, c2 -> 1.0, c3 -> 1.0, default -> 1.0 }; assignments = { }; events = { }; speciesAnnotations = { }; reactionAnnotations = { }; units = { {"time" -> "", "metabolite" -> "substance", "extent" -> "substance"} }; (* Time evolution *) odes = { s1'[t] == 0.0 , s10'[t] == 1.0*re9 , s100'[t] == 1.0*re116 +1.0*re123 -1.0*re117 -1.0*re124, s101'[t] == 1.0*re114 -1.0*re115, s102'[t] == 1.0*re112 -1.0*re113, s103'[t] == 1.0*re113 -1.0*re112, s104'[t] == 1.0*re118 +1.0*re125 -1.0*re119 -1.0*re126, s105'[t] == -1.0*re129, s106'[t] == 1.0*re110 -1.0*re120, s107'[t] == 1.0*re127 -1.0*re128, s108'[t] == -1.0*re111, s11'[t] == -1.0*re10, s110'[t] == 1.0*re104 -1.0*re105, s111'[t] == 1.0*re109 -1.0*re106, s112'[t] == 1.0*re105 -1.0*re106, s113'[t] == 1.0*re106 -1.0*re107, s114'[t] == 1.0*re107 -1.0*re109, s115'[t] == 1.0*re111 -1.0*re110, s116'[t] == 1.0*re131 , s117'[t] == 1.0*re132 +1.0*re133 , s118'[t] == 1.0*re134 +1.0*re135 , s119'[t] == 0.0 , s12'[t] == 1.0*re11 , s13'[t] == -1.0*re11, s14'[t] == 1.0*re66 -1.0*re67, s15'[t] == 0.0 , s16'[t] == 1.0*re65 -1.0*re60, s17'[t] == 1.0*re58 +1.0*re65 -1.0*re59 -1.0*re60, s18'[t] == 0.0 , s19'[t] == 1.0*re59 -1.0*re58, s2'[t] == 1.0*re4 -1.0*re7, s20'[t] == 1.0*re57 , s21'[t] == -1.0*re68, s22'[t] == -1.0*re57, s23'[t] == 1.0*re68 , s24'[t] == 0.0 , s25'[t] == 1.0*re67 -1.0*re66, s26'[t] == 1.0*re61 +1.0*re64 -1.0*re62 -1.0*re63, s27'[t] == 1.0*re62 -1.0*re64 -1.0*re65, s28'[t] == 1.0*re60 +1.0*re63 -1.0*re61, s3'[t] == 1.0*re3 +1.0*re7 +1.0*re10 -1.0*re8 -1.0*re9 -1.0*re12, s35'[t] == 1.0*re120 , s37'[t] == -1.0*re121, s38'[t] == -1.0*re122, s39'[t] == 1.0*re122 , s4'[t] == -1.0*re3, s42'[t] == 1.0*re128 -1.0*re127, s43'[t] == 1.0*re124 -1.0*re123, s44'[t] == 1.0*re126 -1.0*re125, s45'[t] == 1.0*re37 -1.0*re50 -1.0*re51 -1.0*re132, s47'[t] == 1.0*re42 +1.0*re132 +1.0*re138 +1.0*re139 -1.0*re37, s48'[t] == 1.0*re41 +1.0*re72 +1.0*re133 +1.0*re136 +1.0*re137 -1.0*re38 -1.0*re42, s49'[t] == 1.0*re129 , s5'[t] == -1.0*re4, s50'[t] == 1.0*re38 +1.0*re50 +1.0*re53 -1.0*re133, s51'[t] == 1.0*re71 +1.0*re121 -1.0*re37 -1.0*re38 -1.0*re131, s52'[t] == -1.0*re41, s57'[t] == 1.0*re53 +1.0*re71 +1.0*re134 +1.0*re135 +1.0*re136 +1.0*re137 +1.0*re138 +1.0*re139 -1.0*re51, s58'[t] == 1.0*re51 -1.0*re52 -1.0*re55 -1.0*re138, s6'[t] == 1.0*re5 -1.0*re6, s60'[t] == 1.0*re55 -1.0*re54 -1.0*re139, s61'[t] == 1.0*re52 -1.0*re53 -1.0*re56 -1.0*re136, s62'[t] == 1.0*re54 +1.0*re56 -1.0*re72 -1.0*re137, s63'[t] == -1.0*re69, s64'[t] == 1.0*re69 , s65'[t] == 1.0*re72 -1.0*re70 -1.0*re135, s66'[t] == 1.0*re70 -1.0*re71 -1.0*re134, s7'[t] == -1.0*re5, s8'[t] == 1.0*re6 , s9'[t] == 1.0*re8 +1.0*re12 , s91'[t] == 1.0*re108 -1.0*re104, s92'[t] == 1.0*re103 , s93'[t] == 1.0*re102 +1.0*re107 -1.0*re104, s94'[t] == -1.0*re103, s95'[t] == -1.0*re102, s96'[t] == 1.0*re117 -1.0*re116, s97'[t] == 1.0*re115 -1.0*re114, s98'[t] == 1.0*re109 -1.0*re108, s99'[t] == 1.0*re119 -1.0*re118 }; timeCourse = NDSolve[Join[odes, initialValues]//.rateEquations//.assignments//.parameters, variables, {t, 0, 100}]; (* Steady-state solution initialized with result of time evolution *) findRootEquations = odes /.D[_[t],t]->0; findRootVariables = Partition[Flatten[{#, #/.timeCourse/.t->100} &/@variables],2]; steadyStateVariables = FindRoot[findRootEquations//.rateEquations//.assignments//.parameters, findRootVariables, MaxIterations->100] fluxes = #//.assignments//.parameters/.steadyStateVariables&/@rateEquations (* Plot the time evolution of the variables *) plotTable=Table[Plot[variables[[i]]/.parameters/.timeCourse,{t,0,100},PlotLegends->variables[[i]],PlotRange->Full],{i,Length[variables]}]