begin name koo3 end name begin reactions re102 {1.0}s95 = {1.0}s93 re103 {1.0}s94 = {1.0}s92 re104 {1.0}s91 + {1.0}s93 = {1.0}s110 re105 {1.0}s110 = {1.0}s112 re106 {1.0}s112 + {1.0}s111 = {1.0}s113 re107 {1.0}s113 = {1.0}s114 + {1.0}s93 re108 {1.0}s98 = {1.0}s91 re109 {1.0}s114 = {1.0}s98 + {1.0}s111 re110 {1.0}s115 = {1.0}s106 re111 {1.0}s108 = {1.0}s115 re112 {1.0}s103 = {1.0}s102 re113 {1.0}s102 = {1.0}s103 re114 {1.0}s97 = {1.0}s101 re115 {1.0}s101 = {1.0}s97 re116 {1.0}s96 = {1.0}s100 re117 {1.0}s100 = {1.0}s96 re118 {1.0}s99 = {1.0}s104 re119 {1.0}s104 = {1.0}s99 re120 {1.0}s106 = {1.0}s35 re121 {1.0}s37 = {1.0}s51 re122 {1.0}s38 = {1.0}s39 re123 {1.0}s43 = {1.0}s100 re124 {1.0}s100 = {1.0}s43 re125 {1.0}s44 = {1.0}s104 re126 {1.0}s104 = {1.0}s44 re127 {1.0}s42 = {1.0}s107 re128 {1.0}s107 = {1.0}s42 re129 {1.0}s105 = {1.0}s49 end reactions begin rate equations re102 = (E^(re102unity - (s39[t]/re102tf)^0.35)*re102normal*(re102unity - (s39[t]/re102tf)^0.35))/((re102tinynum + s39[t])/re102unimol)^0.65 re103 = E^(re103unity - (s39[t]/re103tf)^1.3)*re103normal*(s39[t]/re103unimol)^0.3*(re103unity - (s39[t]/re103tf)^1.3) re104 = -(re104kr3*s110[t]) + re104k3*s91[t]*s93[t] re105 = -(re105kr4*s112[t]) + re105k4*s110[t]*s92[t] re106 = re106k5*s111[t]*s112[t] - re106kr5*s113[t] re107 = re107k6*s113[t] - re107kr6*s114[t]*s93[t] re108 = (re108V8*s98[t])/(re108Km8 + s98[t]) re109 = re109k7*s114[t] re110 = re110k25*s115[t] re111 = re111k24t1*s107[t] + re111k24t2*s49[t] re112 = (re112k9*s103[t]*s114[t])/(re112Km9 + s103[t]) re113 = (re113V10*s102[t])/(re113Km10 + s102[t]) re114 = (re114k11*s102[t]*s97[t])/(re114Km11 + s97[t]) re115 = (re115V12*s101[t])/(re115Km12 + s101[t]) re116 = (re116k13*s101[t]*s96[t])/(re116Km13 + s96[t]) re117 = (re117V14*s100[t])/(re117Km14 + s100[t]) re118 = (re118k17*s43[t]*s99[t])/(re118Km17 + s99[t]) re119 = (re119V18*s104[t])/(re119Km18 + s104[t]) re120 = re120k26*s106[t] re121 = (re121V27*s106[t])/(re121Km27 + s106[t]) re122 = re122unitime re123 = (re123V16*s43[t])/(re123Km16 + s43[t]) re124 = (re124k15*s100[t]*s101[t])/(re124Km15 + s100[t]) re125 = (re125V20*s44[t])/(re125Km20 + s44[t]) re126 = (re126k19*s104[t]*s43[t])/(re126Km19 + s104[t]) re127 = (re127k21*s42[t]*s44[t])/(re127Km21 + s42[t]) re128 = (re128V22*s107[t])/(re128Km22 + s107[t]) re129 = (29.256*E^(re129tau*(re129delay - s39[t]/re129tc)))/((1 + 2*E^(re129tau*(re129delay - s39[t]/re129tc)) + E^(2*re129tau*(re129delay - s39[t]/re129tc)))*re129uc) end rate equations begin parameters re102normal = 4.0 re102tf = 60.0 re102unity = 1.0 re102unimol = 1.0 re102tinynum = "1e-06" re103normal = 0.026 re103tf = 540.0 re103unity = 1.0 re103unimol = 1.0 re104k3 = 0.1 re104kr3 = 1.0 re105k4 = 8.33 re105kr4 = 5.0 re106k5 = 60.0 re106kr5 = 546.0 re107k6 = 2040.0 re107kr6 = 15700.0 re108V8 = 154.0 re108Km8 = 340.0 re109k7 = 40.8 re110k25 = 0.001 re111k24t1 = 0.00012 re111k24t2 = "9e-06" re112k9 = 0.222 re112Km9 = 0.181 re113V10 = 0.289 re113Km10 = 0.0571 re114k11 = 0.035 re114Km11 = 10.0 re115Km12 = 8.0 re115V12 = 0.125 re116k13 = 0.005 re116Km13 = 15.0 re117Km14 = 15.0 re117V14 = 0.375 re118k17 = 0.002 re118Km17 = 30.0 re119Km18 = 15.0 re119V18 = 0.05 re120k26 = "2.8e-05" re121V27 = 0.02824 re121Km27 = 16.0 re122unitime = 1.0 re123V16 = 0.375 re123Km16 = 15.0 re124k15 = 0.005 re124Km15 = 15.0 re125V20 = 0.05 re125Km20 = 15.0 re126k19 = 0.002 re126Km19 = 30.0 re127Km21 = 25.0 re127k21 = "4e-05" re128Km22 = 5.0 re128V22 = 0.002 re129tau = 0.55 re129tc = 3600.0 re129uc = 3600.0 re129delay = 5.0 re129unity = 20.0 c1 = 1.0 c3 = 1.0 default = 1.0 end parameters begin initial conditions s100[0] = s100i s101[0] = s101i s102[0] = s102i s103[0] = s103i s104[0] = s104i s105[0] = s105i s106[0] = s106i s107[0] = s107i s108[0] = s108i s110[0] = s110i s111[0] = s111i s112[0] = s112i s113[0] = s113i s114[0] = s114i s115[0] = s115i s119[0] = s119i s35[0] = s35i s37[0] = s37i s38[0] = s38i s39[0] = s39i s42[0] = s42i s43[0] = s43i s44[0] = s44i s49[0] = s49i s51[0] = s51i s91[0] = s91i s92[0] = s92i s93[0] = s93i s94[0] = s94i s95[0] = s95i s96[0] = s96i s97[0] = s97i s98[0] = s98i s99[0] = s99i end initial conditions begin initial values s100i = 0.288 s101i = 1.486 s102i = 0.616 s103i = 119.384 s104i = 0.003 s105i = 0.0 s106i = 3.214 s107i = 0.0 s108i = 0.0 s110i = 0.857 s111i = 3.23 s112i = 15.962 s113i = 5.577 s114i = 1.193 s115i = 0.09 s119i = 0.0 s35i = 0.0 s37i = 10000.0 s38i = 0.0 s39i = 0.0 s42i = 50.0 s43i = 0.006 s44i = 0.0 s49i = 10.0 s51i = 34.98 s91i = 819.25 s92i = 18.0 s93i = 0.605 s94i = 72.0 s95i = 57.0 s96i = 299.706 s97i = 98.514 s98i = 157.162 s99i = 299.997 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units