begin name jullesson2 end name begin reactions v1 {1.0}IR = {1.0}IRp v1m {1.0}IRp = {1.0}IR v2 {1.0}IRS1 = {1.0}IRS1p v2m {1.0}IRS1p = {1.0}IRS1 v3 {1.0}IRS1ser307 = {1.0}IRS1ser307p v3m {1.0}IRS1ser307p = {1.0}IRS1ser307 v4 {1.0}mTOR = {1.0}mTORp v4m {1.0}mTORp = {1.0}mTOR v5 {1.0}S6K = {1.0}S6Kp v5T {1.0}S6KDN + {1.0}mTORp = {1.0}mTORpS6KDN v5m {1.0}S6Kp = {1.0}S6K v6 {1.0}S6 = {1.0}S6p v6m {1.0}S6p = {1.0}S6 v7 {1.0}IRi = {1.0}IR v7m {1.0}IRp = {1.0}IRi vM5T {1.0}mTORpS6KDN = {1.0}S6KDN + {1.0}mTORp end reactions begin rate equations v1 = IRbasal*IR[t] + Ins*k1*IR[t] v1m = k1m*IRp[t] v2 = k2*IRp[t]*IRS1[t] v2m = k2m*IRS1p[t] v3 = k3*IRS1ser307[t]*S6Kp[t] v3m = k3m*IRS1ser307p[t] v4 = k4*IRS1p[t]*mTOR[t] v4m = k4m*mTORp[t] v5 = k5*mTORp[t]*S6K[t] v5T = I*mTORp[t]*S6KDN[t] v5m = k5m*S6Kp[t] v6 = k6*S6[t]*S6Kp[t] v6m = k6m*S6p[t] v7 = k7*IRi[t] v7m = k7m*IRp[t] vM5T = k5tm*mTORpS6KDN[t] end rate equations begin parameters I = 0.0006 IRbasal = 0.0635 Ins = 100.0 k1 = 6.0982 k1m = 366.2795 k2 = 0.4397 k2m = 0.5174 k3 = 20660.1506 k3m = 1.9552 k4 = 0.085 k4m = 0.082 k5 = 0.1965 k5m = 0.1968 k5tm = "1.7709e-05" k6 = 35.9042 k6m = 0.0138 k7 = 0.1499 k7m = 97.5553 default = 1.0 end parameters begin initial conditions IR[0] = IRi IRS1[0] = IRS1i IRS1p[0] = IRS1pi IRS1ser307[0] = IRS1ser307i IRS1ser307p[0] = IRS1ser307pi IRi[0] = IRii IRp[0] = IRpi S6[0] = S6i S6K[0] = S6Ki S6KDN[0] = S6KDNi S6Kp[0] = S6Kpi S6p[0] = S6pi mTOR[0] = mTORi mTORp[0] = mTORpi mTORpS6KDN[0] = mTORpS6KDNi end initial conditions begin initial values IRi = 0.9181 IRS1i = 0.9999 IRS1pi = 0.0001 IRS1ser307i = 0.5408 IRS1ser307pi = 0.4592 IRii = 0.0818 IRpi = 0.0001 S6i = 0.7765 S6Ki = 0.9999 S6KDNi = 99.7272 S6Kpi = 8.035e-05 S6pi = 0.2235 mTORi = 0.7271 mTORpi = 8.045e-05 mTORpS6KDNi = 0.2728 end initial values begin assignment rules fig3bS6p := 140.688371115354*S6p[t] fig6dS6p := 5.0036269004157*S6p[t] fig6eIRS1p := 83773.99869569197*(-0.000106747023438893 + IRS1p[t]) fig3bIRS1ser307p := 110.795803138294*IRS1ser307p[t] fig6bS6Kp := 4455.78636783405*S6Kp[t] fig6cIRS1ser307p := 2.60412436101051*IRS1ser307p[t] fig6gIRS1ser307p := 283.31617806680646*(-0.538627018751669 + IRS1ser307p[t]) fig6fS6p := 223.46246244978784*(-0.000106747023438893 + S6p[t]) fig6aIRS1p := 28765.5323430673*IRS1p[t] end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units