begin name jiang1 end name begin reactions GAPflow {1.0}GAP = {1.0}$EXTERNAL GLCflow {1.0}$EXTERNAL = {1.0}GLC LACflow {1.0}LAC = {1.0}$EXTERNAL hidden1 {1.0}AMP + {1.0}ATPcyt = {2.0}ADPcyt v1 {1.0}GLC + {1.0}ATPcyt = {1.0}F6P + {1.0}ADPcyt v10 {1.0}OXA + {1.0}AcetylCoA = {1.0}Cit + {1.0}CoA v11 {1.0}Cit = {1.0}IsoCit v12 {1.0}IsoCit + {1.0}NADp = {1.0}OG + {1.0}NADH v14 {1.0}OG + {1.0}CoA + {1.0}NADp = {1.0}CO2 + {1.0}SCoA + {1.0}NADH v15 {1.0}GDP + {1.0}SCoA + {1.0}Pi = {1.0}Suc + {1.0}GTP + {1.0}CoA v16 {1.0}Suc + {1.0}Q = {1.0}Fum + {1.0}QH2 v17 {1.0}Fum = {1.0}Mal v18 {1.0}Mal + {1.0}NADp = {1.0}NADH + {1.0}OXA v2 {1.0}F6P + {1.0}ATPcyt = {1.0}FBP + {1.0}ADPcyt v20 {1.0}Ala + {1.0}OG = {1.0}Glu + {1.0}Pyr v21 {1.0}OXA + {1.0}Glu = {1.0}Asp + {1.0}OG v22 {1.0}Glucyt + {1.0}Asp = {1.0}Aspcyt + {1.0}Glu v24 {1.0}NADH + {1.0}Q = {1.0}NADp + {1.0}QH2 v25 {1.0}QH2 + {2.0}Cytc3p = {1.0}Q + {2.0}Cytc2p v26 {1.0}Cytc2p = {1.0}Cytc3p v27 {1.0}Citcyt + {1.0}CoAcyt = {1.0}OXAcyt + {1.0}AcetylCoAcyt v28 {1.0}ADP + {1.0}Pi = {1.0}ATP + {1.0}H2O v29 {1.0}Citcyt = {1.0}IsoCitcyt v3 {1.0}FBP = {2.0}GAP v30 {1.0}Malcyt + {1.0}OG = {1.0}OGcyt + {1.0}Mal v31 {1.0}NADHcyt + {1.0}OXAcyt = {1.0}Malcyt + {1.0}NAD v32 {1.0}Aspcyt + {1.0}OGcyt = {1.0}OXAcyt + {1.0}Glucyt v33 {1.0}Citcyt + {1.0}Mal = {1.0}Malcyt + {1.0}Cit v34 {1.0}ETFred + {1.0}Q = {1.0}ETFox + {1.0}QH2 v35 {1.0}FADH2 + {1.0}ETFox = {1.0}ETFred + {1.0}FAD v36 {1.0}ATP + {1.0}CO2 + {1.0}Pyr = {1.0}Pi + {1.0}ADP + {1.0}OXA v37 {1.0}G3P + {1.0}FAD = {1.0}FADH2 + {1.0}DHAP v38 {1.0}NADHcyt + {1.0}DHAP = {1.0}G3P + {1.0}NAD v39 {1.0}Malcyt + {1.0}NADPcyt = {1.0}NADPHcyt + {1.0}PYRcyt v4 {1.0}GAP + {1.0}NAD = {1.0}DPG + {1.0}NADHcyt v40 {1.0}ADPcyt = {1.0}ADP v41 {1.0}IsoCitcyt + {1.0}NADPcyt = {1.0}OGcyt + {1.0}NADPHcyt v42 {1.0}IsoCitcyt + {1.0}Mal = {1.0}Malcyt + {1.0}IsoCit v43 {1.0}ATP = {1.0}ATPcyt v44 {1.0}Mal + {1.0}NADPp = {1.0}NADPH + {1.0}Pyr v5 {1.0}DPG + {1.0}ADPcyt = {1.0}PEP + {1.0}ATPcyt v6 {1.0}PEP + {1.0}ADPcyt = {1.0}PYRcyt + {1.0}ATPcyt v7 {1.0}PYRcyt + {1.0}NADHcyt = {1.0}LAC + {1.0}NAD v8 {1.0}PYRcyt = {1.0}Pyr v9 {1.0}Pyr + {1.0}CoA + {1.0}NADp = {1.0}CO2 + {1.0}AcetylCoA + {1.0}NADH end reactions begin rate equations GAPflow = CYTOPLASM*flow*GAP[t] GLCflow = CYTOPLASM*flow*(GLCflowGlcF/1000 - GLC[t]) LACflow = CYTOPLASM*flow*LAC[t] hidden1 = CYTOPLASM*(-(hidden1k9b*ADPcyt[t]^2) + hidden1k9f*AMP[t]*ATPcyt[t]) v1 = (CYTOPLASM*v1V1*ATPcyt[t]*GLC[t])/((v1K1ATP + ATPcyt[t])*(v1K1GLC + GLC[t])) v10 = (MATRIX*v10V*v10v10CS*AcetylCoA[t]*OXA[t])/(v10Kia*v10Kib + v10Kb*AcetylCoA[t] + v10Ka*OXA[t] + AcetylCoA[t]*OXA[t]) v11 = (MATRIX*v11v11ACO*(v11KcF*v11Kp*Cit[t] - v11KcR*v11Ks*IsoCit[t]))/(v11Kp*v11Ks + v11Kp*Cit[t] + v11Ks*IsoCit[t]) v12 = (MATRIX*v12KcF*v12v12IDHa*(v12b*ADP[t]*IsoCit[t] + IsoCit[t]^2))/(v12f + v12d*ADP[t] + v12c*IsoCit[t] + v12e*ADP[t]*IsoCit[t] + IsoCit[t]^2) v14 = (MATRIX*v14KcF*v14v14OGDC*CoA[t]*NADp[t]*OG[t])/(v14KmA*CoA[t]*NADp[t] + v14KmC*CoA[t]*OG[t] + (v14KmC*CoA[t]*NADH[t]*OG[t])/v14Kir + v14KmB*NADp[t]*OG[t] + CoA[t]*NADp[t]*OG[t] + (v14Kib*v14Kic*v14KmA*v14KmP*NADH[t]*SCoA[t])/(v14Kip*v14Kiq*v14KmR) + (v14Kib*v14Kic*v14KmA*v14KmP*NADH[t]*OG[t]*SCoA[t])/(v14Kia*v14Kip*v14Kiq*v14KmR) + (v14KmB*NADp[t]*OG[t]*SCoA[t])/v14Kiq) v15 = (MATRIX*(Pi*GDP[t]*SCoA[t] - (CoA[t]*GTP[t]*Suc[t])/v15Keq)*(v15Kc1*v15v15SCS + v15Kc2*v15v15SCS*(Pi/v15KmC2 + (v15Kip*v15KmC*Suc[t])/v15KmC2)))/(Pi*v15Kia*v15KmB + (Pi*v15Kia*v15KmB*CoA[t])/v15Kir + Pi*v15KmB*GDP[t] + (Pi*v15KmB*CoA[t]*GDP[t])/v15Kir + (Pi*v15Kia*v15KmB*GTP[t])/v15Kiq + (Pi*v15Kia*v15KmB*CoA[t]*GTP[t])/(v15Kir*v15KmQ) + (v15Kia*v15Kic*v15KmB*CoA[t]*GTP[t])/(v15Kir*v15KmQ) + Pi*v15KmA*SCoA[t] + Pi*GDP[t]*SCoA[t] + v15KmC*GDP[t]*SCoA[t] + (Pi^2*GDP[t]*SCoA[t])/v15KmC2 + (Pi*v15KmA*GTP[t]*SCoA[t])/v15Kiq + (v15Kia*v15KmB*v15KmC*Suc[t])/v15Kip + (v15Kia*v15KmB*v15KmC*CoA[t]*Suc[t])/(v15Kip*v15Kir) + (v15KmB*v15KmC*GDP[t]*Suc[t])/v15Kip + (v15KmB*v15KmC*CoA[t]*GDP[t]*Suc[t])/(v15Kip*v15Kir) + (v15Kia*v15KmB*v15KmC*GTP[t]*Suc[t])/(v15Kip*v15Kiq) + (v15Kia*v15KmB*v15KmC*CoA[t]*GTP[t]*Suc[t])/(v15Kip*v15Kir*v15KmQ) + (Pi*v15Kia*v15KmB*CoA[t]*GTP[t]*Suc[t])/(v15Kir*v15KmP2*v15KmQ) + (v15KmA*v15KmC*SCoA[t]*Suc[t])/v15Kip + (v15KmC*GDP[t]*SCoA[t]*Suc[t])/v15Kip + (Pi*v15KmC*GDP[t]*SCoA[t]*Suc[t])/(v15Kip*v15KmC2) + (v15KmA*v15KmC*GTP[t]*SCoA[t]*Suc[t])/(v15Kip*v15Kiq) + (v15Kia*v15KmB*v15KmC*CoA[t]*GTP[t]*Suc[t]^2)/(v15Kip*v15Kir*v15KmP2*v15KmQ)) v16 = (MATRIX*v16KcF*v16KcR*v16v16SDH*(-((Fum[t]*QH2[t])/v16Keq) + Q[t]*Suc[t]))/((v16KcF*v16KmP2*Fum[t])/v16Keq + v16KcR*v16KmS1*Q[t] + (v16KcF*v16KmP1*QH2[t])/v16Keq + (v16KcF*Fum[t]*QH2[t])/v16Keq + (v16KcR*v16KmS1*Q[t]*QH2[t])/v16KiP2 + v16KcR*v16KmS2*Suc[t] + (v16KcF*v16KmP2*Fum[t]*Suc[t])/(v16Keq*v16KiS1) + v16KcR*Q[t]*Suc[t]) v17 = (MATRIX*v17v17FM*(v17KcF*v17Kp*Fum[t] - v17KcR*v17Ks*Mal[t]))/(v17Kp*v17Ks + v17Kp*Fum[t] + v17Ks*Mal[t]) v18 = (MATRIX*v18v18MDH*((v18KcF*Mal[t]*NADp[t])/(v18KiS1*v18KmS2) - (v18KcR*NADH[t]*OXA[t])/(v18KiP2*v18KmP1)))/(1 + Mal[t]/v18KiS1 + NADH[t]/v18KiP2 + (v18KmS1*NADp[t])/(v18KiS1*v18KmS2) + (Mal[t]*NADp[t])/(v18KiS1*v18KmS2) + (v18KmS1*NADH[t]*NADp[t])/(v18KiP2*v18KiS1*v18KmS2) + (v18KmP2*OXA[t])/(v18KiP2*v18KmP1) + (v18KmP2*Mal[t]*OXA[t])/(v18KiP2*v18KiS1*v18KmP1) + (v18KiP2*NADH[t]*OXA[t])/v18KmP1 + (Mal[t]*NADp[t]*OXA[t])/(v18KiP1*v18KiS1*v18KmS2) + (NADH[t]*NADp[t]*OXA[t])/(v18KiP2*v18KiS2*v18KmP1)) v2 = (CYTOPLASM*v2V2*ATPcyt[t]*F6P[t]^2)/((v2K2ATP + ATPcyt[t])*(v2K2*(1 + (v2k2*ATPcyt[t]^2)/AMP[t]^2) + F6P[t]^2)) v20 = (MATRIX*v20KcF*v20KcR*v20v20AlaTA*(Ala[t]*OG[t] - (Glu[t]*Pyr[t])/v20Keq))/(v20KcR*v20KmS2*Ala[t] + (v20KcF*v20KmP2*Glu[t])/v20Keq + (v20KcF*v20KmP2*Ala[t]*Glu[t])/(v20Keq*v20KiS1) + v20KcR*v20KmS1*OG[t] + v20KcR*Ala[t]*OG[t] + (v20KcF*v20KmP1*Pyr[t])/v20Keq + (v20KcF*Glu[t]*Pyr[t])/v20Keq + (v20KcR*v20KmS1*OG[t]*Pyr[t])/v20KiP2) v21 = (MATRIX*v21KcF*v21KcR*v21v21AspTA*(-((Asp[t]*OG[t])/v21Keq) + Glu[t]*OXA[t]))/((v21KcF*v21KmP2*Asp[t])/v21Keq + v21KcR*v21KmS1*Glu[t] + (v21KcF*v21KmP1*OG[t])/v21Keq + (v21KcF*Asp[t]*OG[t])/v21Keq + (v21KcR*v21KmS1*Glu[t]*OG[t])/v21KiP2 + v21KcR*v21KmS2*OXA[t] + (v21KcF*v21KmP2*Asp[t]*OXA[t])/(v21Keq*v21KiS1) + v21KcR*Glu[t]*OXA[t]) v22 = (MATRIX*v22v22AGC*(-((v22KcR*Aspcyt[t]*Glu[t])/(v22beta*v22KiP1*v22KiP2)) + (v22KcF*Asp[t]*Glucyt[t])/(v22alpha*v22KiS1*v22KiS2)))/(1 + Asp[t]/v22KiS1 + Aspcyt[t]/v22KiP2 + Glu[t]/v22KiP1 + (Asp[t]*Glu[t])/(v22delta*v22KiP1*v22KiS1) + (Aspcyt[t]*Glu[t])/(v22beta*v22KiP1*v22KiP2) + Glucyt[t]/v22KiS2 + (Asp[t]*Glucyt[t])/(v22alpha*v22KiS1*v22KiS2) + (Aspcyt[t]*Glucyt[t])/(v22gamma*v22KiP2*v22KiS2)) v24 = (MATRIX*v24KcF*v24KcR*v24v24ComplexI*(NADH[t]*Q[t] - (NADp[t]*QH2[t])/v24Keq))/(v24KcR*v24KmS2*NADH[t] + (v24KcF*v24KmP2*NADp[t])/v24Keq + (v24KcF*v24KmP2*NADH[t]*NADp[t])/(v24Keq*v24KiS1) + v24KcR*v24KmS1*Q[t] + v24KcR*NADH[t]*Q[t] + (v24KcF*v24KmP1*QH2[t])/v24Keq + (v24KcF*NADp[t]*QH2[t])/v24Keq + (v24KcR*v24KmS1*Q[t]*QH2[t])/v24KiP2) v25 = (MTIMS*v25KcF*v25v25ComplexIII*Cytc3p[t]*QH2[t])/(v25KmA*Cytc3p[t] + v25KmB*QH2[t] + Cytc3p[t]*QH2[t] + Cytc2p[t]*(v25Kb2*v25KmA*v25Kq2 + v25KmA*v25Kq2*Cytc3p[t] + (v25Kb1*v25KcF*v25Kq1*QH2[t])/v25k8 + (v25KcF*v25Kq1*Cytc3p[t]*QH2[t])/v25k8)) v26 = (MTIMS*v26KcF*v26v26ComplexIV*Cytc2p[t])/(v26Ks + Cytc2p[t]) v27 = (CYTOPLASM*v27Kc*v27Kid*v27V*v27v10CS*AcetylCoAcyt[t]*OXAcyt[t])/(v27Kb*v27Keq*v27Kia*(v27Kia*v27Kib + v27Kb*AcetylCoAcyt[t] + v27Ka*OXAcyt[t] + AcetylCoAcyt[t]*OXAcyt[t])) v28 = (MATRIX*v28V*v28v28ComplexV*ADP[t])/(v28Km + ADP[t] + ADP[t]^2/v28Ki) v29 = (CYTOPLASM*v29v29ACO*(v29KcF*v29Kp*Citcyt[t] - v29KcR*v29Ks*IsoCitcyt[t]))/(v29Kp*v29Ks + v29Kp*Citcyt[t] + v29Ks*IsoCitcyt[t]) v3 = CYTOPLASM*(v3k3f*FBP[t] - v3k3b*GAP[t]^2) v30 = (MATRIX*v30v30OGC*((v30KcF*Malcyt[t]*OG[t])/(v30alpha*v30KiS1*v30KiS2) - (v30KcR*Mal[t]*OGcyt[t])/(v30beta*v30KiP1*v30KiP2)))/(1 + Mal[t]/v30KiP1 + Malcyt[t]/v30KiS2 + OG[t]/v30KiS1 + (Mal[t]*OG[t])/(v30delta*v30KiP1*v30KiS1) + (Malcyt[t]*OG[t])/(v30alpha*v30KiS1*v30KiS2) + OGcyt[t]/v30KiP2 + (Mal[t]*OGcyt[t])/(v30beta*v30KiP1*v30KiP2) + (Malcyt[t]*OGcyt[t])/(v30gamma*v30KiP2*v30KiS2)) v31 = (CYTOPLASM*v31v31MDH*(-(v31kminus1*v31kminus2*v31kminus3*v31kminus4*Malcyt[t]*NAD[t]) + v31k1*v31k2*v31k3*v31k4*NADHcyt[t]*OXAcyt[t]))/(v31k1 + v31kminus2 + v31k4*v31kminus1*(v31k3 + v31kminus2) + v31kminus1*v31kminus2*v31kminus3*Malcyt[t] + v31kminus1*(v31k3 + v31kminus2)*v31kminus4*NAD[t] + (v31kminus1 + v31kminus2)*v31kminus3*v31kminus4*Malcyt[t]*NAD[t] + v31k1*v31k4*(v31k3 + v31kminus2)*NADHcyt[t] + v31kminus3*Malcyt[t]*NADHcyt[t] + v31k2*v31k3*v31k4*OXAcyt[t] + v31k2*v31k3*v31kminus4*NAD[t]*OXAcyt[t] + v31k2*v31kminus3*v31kminus4*Malcyt[t]*NAD[t]*OXAcyt[t] + v31k1*v31k2*(v31k3 + v31k4)*NADHcyt[t]*OXAcyt[t] + v31k1*v31k2*v31kminus3*Malcyt[t]*NADHcyt[t]*OXAcyt[t]) v32 = (CYTOPLASM*v32KcF*v32KcR*v32v32AspTA*(Aspcyt[t]*OGcyt[t] - (Glucyt[t]*OXAcyt[t])/v32Keq))/(v32KcR*v32KmS2*Aspcyt[t] + (v32KcF*v32KmP1*Glucyt[t])/v32Keq + v32KcR*v32KmS1*OGcyt[t] + v32KcR*Aspcyt[t]*OGcyt[t] + (v32KcR*v32KmS1*Glucyt[t]*OGcyt[t])/v32KiP2 + (v32KcF*v32KmP2*OXAcyt[t])/v32Keq + (v32KcF*v32KmP2*Aspcyt[t]*OXAcyt[t])/(v32Keq*v32KiS1) + (v32KcF*Glucyt[t]*OXAcyt[t])/v32Keq) v33 = (MATRIX*v33v33CIC*((v33KcF*Citcyt[t]*Mal[t])/(v33alpha*v33KiS1*v33KiS2) - (v33KcR*Cit[t]*Malcyt[t])/(v33beta*v33KiP1*v33KiP2)))/(1 + Cit[t]/v33KiP2 + Citcyt[t]/v33KiS1 + Mal[t]/v33KiS2 + (Cit[t]*Mal[t])/(v33gamma*v33KiP2*v33KiS2) + (Citcyt[t]*Mal[t])/(v33alpha*v33KiS1*v33KiS2) + Malcyt[t]/v33KiP1 + (Cit[t]*Malcyt[t])/(v33beta*v33KiP1*v33KiP2) + (Citcyt[t]*Malcyt[t])/(v33delta*v33KiP1*v33KiS1)) v34 = (MATRIX*v34KcF*v34KcR*v34v34ETFQO*(ETFred[t]*Q[t] - (ETFox[t]*QH2[t])/v34Keq))/((v34KcF*v34KmP2*ETFox[t])/v34Keq + v34KcR*v34KmS2*ETFred[t] + (v34KcF*v34KmP2*ETFox[t]*ETFred[t])/(v34Keq*v34KiS1) + v34KcR*v34KmS1*Q[t] + v34KcR*ETFred[t]*Q[t] + (v34KcF*v34KmP1*QH2[t])/v34Keq + (v34KcF*ETFox[t]*QH2[t])/v34Keq + (v34KcR*v34KmS1*Q[t]*QH2[t])/v34KiP2) v35 = (MATRIX*v35KcF*v35KcR*v35v35ACD*(-((ETFred[t]*FAD[t])/v35Keq) + ETFox[t]*FADH2[t]))/(v35KcR*v35KiS1*v35KmS2 + v35KcR*v35KmS1*ETFox[t] + (v35KcF*v35KmP2*ETFred[t])/v35Keq + (v35KcF*v35KmP1*FAD[t])/v35Keq + (v35KcR*v35KmS1*ETFox[t]*FAD[t])/v35KiP2 + (v35KcF*ETFred[t]*FAD[t])/v35Keq + (v35KcF*ETFox[t]*ETFred[t]*FAD[t])/(v35Keq*v35KiS2) + v35KcR*v35KmS2*FADH2[t] + v35KcR*ETFox[t]*FADH2[t] + (v35KcF*v35KmP2*ETFred[t]*FADH2[t])/(v35Keq*v35KiS1) + (v35KcR*ETFox[t]*ETFred[t]*FADH2[t])/v35KiP1) v36 = (MATRIX*v36KcF*v36KcR*v36v36PC*(-((Pi*ADP[t]*OXA[t])/v36Keq) + ATP[t]*CO2[t]*Pyr[t]))/((Pi*v36KcF*v36KmR*ADP[t])/v36Keq + v36KcR*v36KmC*ATP[t]*CO2[t] + (Pi*v36KcF*v36KmQ*OXA[t])/v36Keq + (v36KcF*v36Kip*v36KmQ*OXA[t])/v36Keq + (Pi*v36KcF*ADP[t]*OXA[t])/v36Keq + (v36KcF*v36KmP*ADP[t]*OXA[t])/v36Keq + (v36KcF*v36KmP*ATP[t]*OXA[t])/v36Keq + (v36KcF*v36Kiq*v36KmP*CO2[t]*OXA[t])/(v36Keq*v36Kib) + (Pi*v36KcF*v36KmQ*CO2[t]*OXA[t])/(v36Keq*v36Kib) + (v36KcF*v36KmP*ADP[t]*CO2[t]*OXA[t])/(v36Keq*v36Kib) + (v36KcR*v36KmA*ATP[t]*CO2[t]*OXA[t])/v36Kir + v36KcR*v36Kia*v36KmB*Pyr[t] + (Pi*v36KcR*v36Kia*v36KmB*Pyr[t])/v36Kip + v36KcR*v36KmB*ADP[t]*Pyr[t] + (Pi*v36KcF*v36KmR*ADP[t]*Pyr[t])/(v36Keq*v36Kic) + v36KcR*v36KmB*ATP[t]*Pyr[t] + v36KcR*v36KmA*CO2[t]*Pyr[t] + (Pi*v36KcR*v36KmA*CO2[t]*Pyr[t])/v36Kip + (v36KcR*v36KmA*ADP[t]*CO2[t]*Pyr[t])/v36Kiq + v36KcR*ATP[t]*CO2[t]*Pyr[t]) v37 = (CYTOPLASM*v37V*v37v37GUT2P*G3P[t])/(v37K + G3P[t]) v38 = (CYTOPLASM*v38V*v38v38GUT2P*NADHcyt[t])/(v38K + NADHcyt[t]) v39 = (CYTOPLASM*v39Kcat*v39v39MDH*Malcyt[t]*NADPcyt[t])/((v39Kmal + Malcyt[t])*(v39Knadp + NADPcyt[t])) v4 = (CYTOPLASM*v4V4*GAP[t]*NAD[t])/((v4K4GAP + GAP[t])*(v4K4NAD + NAD[t])) v40 = (MATRIX*v40V*v40v40AAC*ADPcyt[t])/(v40K + ADPcyt[t]) v41 = CYTOPLASM*v41v41IDHc*((IsoCitcyt[t]*NADPcyt[t])/(v41phi12 + v41phi2*IsoCitcyt[t] + v41phi1*NADPcyt[t] + v41phi0*IsoCitcyt[t]*NADPcyt[t]) - (CO2[t]*NADPHcyt[t]*OGcyt[t])/(v41phir123 + v41phir12*CO2[t] + v41phir13*NADPHcyt[t] + v41phir1*CO2[t]*NADPHcyt[t] + v41phir23*OGcyt[t] + v41phir2*CO2[t]*OGcyt[t] + v41phir3*NADPHcyt[t]*OGcyt[t] + v41phir0*CO2[t]*NADPHcyt[t]*OGcyt[t])) v42 = (MATRIX*v42v42CIC*((v42KcF*IsoCitcyt[t]*Mal[t])/(v42alpha*v42KiS1*v42KiS2) - (v42KcR*IsoCit[t]*Malcyt[t])/(v42beta*v42KiP1*v42KiP2)))/(1 + IsoCit[t]/v42KiP2 + IsoCitcyt[t]/v42KiS1 + Mal[t]/v42KiS2 + (IsoCit[t]*Mal[t])/(v42gamma*v42KiP2*v42KiS2) + (IsoCitcyt[t]*Mal[t])/(v42alpha*v42KiS1*v42KiS2) + Malcyt[t]/v42KiP1 + (IsoCit[t]*Malcyt[t])/(v42beta*v42KiP1*v42KiP2) + (IsoCitcyt[t]*Malcyt[t])/(v42delta*v42KiP1*v42KiS1)) v43 = (MATRIX*v43V*v43v43AAC*ATP[t])/(v43K + ATP[t]) v44 = (MATRIX*v44Kcat*v44v44MDH*Mal[t])/(v44Km + Mal[t]) v5 = CYTOPLASM*(v5k5f*ADPcyt[t]*DPG[t] - v5k5b*ATPcyt[t]*PEP[t]) v6 = (CYTOPLASM*v6V6*ADPcyt[t]*PEP[t])/((v6K6ADP + ADPcyt[t])*(v6K6PEP + PEP[t])) v7 = CYTOPLASM*(-(v7k8b*LAC[t]*NAD[t]) + v7k8f*NADHcyt[t]*PYRcyt[t]) v8 = (MATRIX*v8V*v8v8PYC*PYRcyt[t])/(v8K + PYRcyt[t]) v9 = (MATRIX*v9KcF*v9v9PDC*CoA[t]*NADp[t]*Pyr[t])/((v9Kib*v9Kic*v9KmA*v9KmP*AcetylCoA[t]*NADH[t])/(v9Kip*v9Kiq*v9KmR) + v9KmA*CoA[t]*NADp[t] + v9KmC*CoA[t]*Pyr[t] + (v9Kib*v9Kic*v9KmA*v9KmP*AcetylCoA[t]*NADH[t]*Pyr[t])/(v9Kia*v9Kip*v9Kiq*v9KmR) + (v9KmC*CoA[t]*NADH[t]*Pyr[t])/v9Kir + v9KmB*NADp[t]*Pyr[t] + (v9KmB*AcetylCoA[t]*NADp[t]*Pyr[t])/v9Kiq + CoA[t]*NADp[t]*Pyr[t]) end rate equations begin parameters flow = 0.011 v24KmS1 = "9.2e-06" GLCflowGlcF = 64.941 v1V1 = 0.0005 v1K1GLC = 0.0001 v1K1ATP = "6.3e-05" v2V2 = 0.0015 v2K2 = "1.6e-09" v2k2 = 0.017 v2K2ATP = "1e-05" v3k3f = 1.0 v3k3b = 0.05 v4V4 = 0.01 v4K4GAP = 0.001 v4K4NAD = 0.001 v5k5f = 1000.0 v5k5b = 500.0 v6V6 = 0.01 v6K6PEP = 0.0002 v6K6ADP = 0.0003 v7k8f = 1000.0 v7k8b = 0.143 hidden1k9f = 10000.0 hidden1k9b = 10000.0 v8V = "1e-08" v8K = "1.5e-07" v8v8PYC = 0.00033211 v9KmA = "2.5e-05" v9KmB = "1.3e-05" v9KmC = "5e-05" v9KmP = "5.9e-07" v9KmR = "6.9e-07" v9Kia = 0.00055 v9Kib = 0.0003 v9Kic = 0.00018 v9Kip = "6e-05" v9Kiq = "3.5e-05" v9Kir = "3.6e-05" v9KcF = 856.0 v9v9PDC = "3.8617e-07" v10V = 0.005267 v10Ka = "1.18e-05" v10Kb = "4.8e-06" v10Kia = "1e-05" v10Kib = "4e-06" v10v10CS = "3.8617e-07" v11Ks = 0.0005 v11Kp = 0.00011 v11KcF = 20.47 v11KcR = 31.44 v11v11ACO = "3.8617e-07" v12KcF = 105.0 v12b = 29.6 v12c = 0.00023 v12d = "7.8e-05" v12e = 0.00064 v12f = 0.00036 v12v12IDHa = "3.8617e-07" v14KmA = 0.00022 v14KmB = "2.5e-05" v14KmC = "5e-05" v14KmP = 0.0003 v14KmR = 0.0006 v14Kia = 0.00072 v14Kib = 0.00074 v14Kic = 0.0001 v14Kip = "1.1e-06" v14Kiq = "8.1e-05" v14Kir = "2.5e-05" v14KcF = 177.0 v14v14OGDC = "3.8617e-07" v15KmA = "5e-06" v15KmB = "3.5e-05" v15KmC = 0.00045 v15KmP = 0.0006 v15KmQ = "7.5e-06" v15KmC2 = 0.00045 v15KmP2 = 0.0006 v15Keq = 8.375 v15Kia = 0.0004 v15Kib = "2e-05" v15Kic = "3e-05" v15Kip = 0.07 v15Kiq = "5e-06" v15Kir = "6.7e-06" v15Kc1 = 100.0 v15Kc2 = 100.0 v15v15SCS = "3.8617e-07" v16KmS1 = "3e-05" v16KmS2 = "6.9e-05" v16KmP1 = "3e-07" v16KmP2 = "1.5e-06" v16KiS1 = "4.1e-06" v16KiP2 = "5.6e-06" v16Keq = 0.037 v16KcF = 69.3 v16KcR = 1.73 v16v16SDH = "9.9211e-05" v17Kp = "2.5e-05" v17Ks = "5e-06" v17KcF = 800.0 v17KcR = 900.0 v17v17FM = "3.8617e-07" v18KmS1 = "7.2e-05" v18KmS2 = 0.00011 v18KmP1 = 0.0016 v18KmP2 = 0.00017 v18KiS1 = "1.1e-05" v18KiS2 = 0.0001 v18KiP1 = 0.0071 v18KiP2 = 0.0019 v18KcF = 0.39 v18KcR = 0.04 v18v18MDH = "3.8617e-07" v20KmS1 = 0.002 v20KmS2 = 0.0004 v20KmP1 = 0.032 v20KmP2 = 0.0004 v20KiS1 = 0.0087 v20KiP2 = 0.012 v20Keq = 0.69 v20KcF = 337.0 v20KcR = 0.15 v20v20AlaTA = "3.8617e-07" v21KmS1 = 0.0009 v21KmS2 = 0.0001 v21KmP1 = "4e-05" v21KmP2 = 0.004 v21KiS1 = 0.002 v21KiP2 = 0.0083 v21Keq = 6.2 v21KcF = 300.0 v21KcR = 1000.0 v21v21AspTA = "3.8617e-07" v22KiS1 = "8e-05" v22KiS2 = 0.0032 v22KiP1 = 0.00018 v22KiP2 = 0.0028 v22KcF = 10.0 v22KcR = 10.0 v22alpha = 1.0 v22beta = 1.0 v22gamma = 1.0 v22delta = 1.0 v22v22AGC = 0.00033211 v24KmS2 = 0.00026 v24KmP1 = "9.9e-06" v24KmP2 = "5.9e-05" v24KiS1 = "2.1e-08" v24KiP2 = "9.8e-08" v24Keq = 407.9 v24KcF = 498.0 v24KcR = 229.0 v24v24ComplexI = 0.00033211 v25KmA = "2.8e-05" v25KmB = "3e-06" v25Kb1 = "5.4e-06" v25Kb2 = "5.7e-06" v25Kq1 = "2.8e-06" v25Kq2 = "1.9e-06" v25k8 = 622.1 v25KcF = 426.8 v25v25ComplexIII = "9.963e-09" v26Ks = 0.00011 v26KcF = 0.000935 v26v26ComplexIV = 0.002325 v27V = 0.004833 v27Ka = "5e-06" v27Kb = "4.5e-06" v27Kc = "3.9e-05" v27Kia = "5e-06" v27Kib = "4.5e-06" v27Kid = 0.0043 v27Keq = 18000000.0 v27v10CS = "3.8617e-07" v28V = 0.075 v28Km = 0.0045 v28Ki = 0.047 v28v28ComplexV = 0.0033211 v29Ks = 0.0005 v29Kp = 0.00011 v29KcF = 20.47 v29KcR = 31.44 v29v29ACO = "3.8617e-07" v30KiS1 = 0.0003 v30KiS2 = 0.0007 v30KiP1 = 0.0014 v30KiP2 = 0.00017 v30KcF = 3.675 v30KcR = 4.83 v30alpha = 1.0 v30beta = 1.0 v30gamma = 1.0 v30delta = 1.0 v30v30OGC = 0.00033211 v31k1 = 34000000.0 v31k2 = 35000000.0 v31k3 = 4650.0 v31k4 = 214.0 v31kminus1 = 26.0 v31kminus2 = 1400.0 v31kminus3 = 570000.0 v31kminus4 = 260000.0 v31v31MDH = "3.8617e-07" v32KmS1 = 0.0009 v32KmS2 = 0.0001 v32KmP1 = "4e-05" v32KmP2 = 0.004 v32KiS1 = 0.002 v32KiP2 = 0.0083 v32Keq = 6.2 v32KcF = 300.0 v32KcR = 1000.0 v32v32AspTA = "3.8617e-07" v33KiS1 = 0.00013 v33KiS2 = 0.00044 v33KiP1 = 0.00033 v33KiP2 = "4.18e-05" v33KcF = 5.6 v33KcR = 3.5 v33alpha = 1.0 v33beta = 1.0 v33gamma = 1.0 v33delta = 1.0 v33v33CIC = 0.00033211 v34KmS1 = "3.1e-07" v34KmS2 = "3.9e-07" v34KmP1 = "3.2e-07" v34KmP2 = "4.2e-09" v34KiS1 = "3.1e-07" v34KiP2 = "3e-07" v34Keq = 0.66 v34KcF = 78.0 v34KcR = 101.0 v34v34ETFQO = "3.3211e-05" v35KmS1 = "3.9e-05" v35KmS2 = "1.2e-07" v35KmP1 = "1.08e-06" v35KmP2 = "2.42e-05" v35KiS1 = "7.6e-05" v35KiS2 = "2.4e-07" v35KiP1 = "7.53e-05" v35KiP2 = "1.19e-05" v35Keq = 8.99 v35KcF = 2.18 v35KcR = 0.3 v35v35ACD = "3.3211e-05" v36KmA = 0.00011 v36KmB = 0.00163 v36KmC = 0.00037 v36KmP = 0.016 v36KmQ = 0.00024 v36KmR = "5.1e-05" v36Keq = 9.0 v36Kia = 0.00015 v36Kib = 0.0016 v36Kic = 0.00013 v36Kip = 0.0079 v36Kiq = 0.00019 v36Kir = 0.00024 v36KcF = 200.0 v36KcR = 20.0 v36v36PC = "3.8617e-07" v37K = "3.4e-05" v37V = "3.99e-08" v37v37GUT2P = 0.001 v38K = 34.0 v38V = 0.0399 v38v38GUT2P = 0.001 v40V = 0.1667 v40K = 0.012 v40v40AAC = 0.00033211 v41phi0 = 0.051 v41phi1 = "9.5e-08" v41phi2 = "9.6e-07" v41phi12 = "9e-08" v41phir0 = 0.066 v41phir1 = "3.7e-07" v41phir2 = "2.9e-05" v41phir3 = 0.00025 v41phir12 = "6e-12" v41phir13 = "1.3e-10" v41phir23 = "9.4e-08" v41phir123 = "4.6e-14" v41v41IDHc = "3.8617e-07" v42KiS1 = 0.00013 v42KiS2 = 0.00044 v42KiP1 = 0.00033 v42KiP2 = "4.18e-05" v42KcF = 5.6 v42KcR = 3.5 v42alpha = 1.0 v42beta = 1.0 v42gamma = 1.0 v42delta = 1.0 v42v42CIC = 0.00033211 v43V = 1.11667 v43K = 0.005 v43v43AAC = 0.00033211 v39Kcat = 0.333 v39Kmal = 0.000125 v39Knadp = 0.011 v39v39MDH = "3.8617e-07" v44Kcat = 130.5 v44Km = 0.01295 v44v44MDH = "3.8617e-07" CYTOPLASM = 1.0 MATRIX = 1.0 MTIM = 1.0 MTIMS = 1.0 end parameters begin initial conditions ADP[0] = ADPi ADPcyt[0] = ADPcyti AMP[0] = AMPi ATP[0] = ATPi ATPcyt[0] = ATPcyti AcetylCoA[0] = AcetylCoAi AcetylCoAcyt[0] = AcetylCoAcyti Ala[0] = Alai Asp[0] = Aspi Aspcyt[0] = Aspcyti CO2[0] = CO2i Cit[0] = Citi Citcyt[0] = Citcyti CoA[0] = CoAi CoAcyt[0] = CoAcyti Cytc2p[0] = Cytc2pi Cytc3p[0] = Cytc3pi DHAP[0] = DHAPi DPG[0] = DPGi ETFox[0] = ETFoxi ETFred[0] = ETFredi F6P[0] = F6Pi FAD[0] = FADi FADH2[0] = FADH2i FBP[0] = FBPi Fum[0] = Fumi G3P[0] = G3Pi GAP[0] = GAPi GDP[0] = GDPi GLC[0] = GLCi GTP[0] = GTPi Glu[0] = Glui Glucyt[0] = Glucyti H2O[0] = H2Oi IsoCit[0] = IsoCiti IsoCitcyt[0] = IsoCitcyti LAC[0] = LACi Mal[0] = Mali Malcyt[0] = Malcyti NAD[0] = NADi NADH[0] = NADHi NADHcyt[0] = NADHcyti NADPH[0] = NADPHi NADPHcyt[0] = NADPHcyti NADPcyt[0] = NADPcyti NADPp[0] = NADPpi NADp[0] = NADpi OG[0] = OGi OGcyt[0] = OGcyti OXA[0] = OXAi OXAcyt[0] = OXAcyti PEP[0] = PEPi PYRcyt[0] = PYRcyti Pi[0] = Pii Pyr[0] = Pyri Q[0] = Qi QH2[0] = QH2i SCoA[0] = SCoAi Suc[0] = Suci end initial conditions begin initial values ADPi = 0.00045 ADPcyti = 0.000108367 AMPi = 2.61149e-06 ATPi = 0.0045 ATPcyti = 0.00449064 AcetylCoAi = 3e-05 AcetylCoAcyti = 3e-05 Alai = 0.00344 Aspi = 0.00114 Aspcyti = 0.00114 CO2i = 0.00163 Citi = 0.00042 Citcyti = 0.00042 CoAi = 0.000272 CoAcyti = 0.000272 Cytc2pi = 0.00011 Cytc3pi = 0.003 DHAPi = 0.0076925 DPGi = 0.000299109 ETFoxi = 0.00032 ETFredi = 0.00031 F6Pi = 0.00065939 FADi = 0.00101 FADH2i = 7.2e-05 FBPi = 7.70135e-06 Fumi = 6.5e-05 G3Pi = 0.0076925 GAPi = 1.90919e-06 GDPi = 0.00045 GLCi = 1.12817e-05 GTPi = 0.0045 Glui = 0.00303 Glucyti = 0.00303 H2Oi = 0.001 IsoCiti = 0.00042 IsoCitcyti = 0.00042 LACi = 0.00033981 Mali = 0.0005 Malcyti = 0.0005 NADi = 0.00362057 NADHi = 0.00072 NADHcyti = 0.000616118 NADPHi = 7.2e-05 NADPHcyti = 0.000616118 NADPcyti = 0.00362057 NADPpi = 0.0101 NADpi = 0.0101 OGi = 2.1e-05 OGcyti = 2.1e-05 OXAi = 4e-06 OXAcyti = 4e-06 PEPi = 2.1125e-06 PYRcyti = 4.22702e-06 Pii = 0.004 Pyri = 0.001025 Qi = 0.026 QH2i = 0.028 SCoAi = 0.0002941 Suci = 0.00295 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events end events begin process annotations v1 http://identifiers.org/ec-code/2.7.1.2 v10 http://identifiers.org/ec-code/2.3.3.3 v10 http://identifiers.org/ec-code/2.3.3.1 v11 http://identifiers.org/ec-code/4.2.1.3 v12 http://identifiers.org/ec-code/1.1.1.41 v14 http://identifiers.org/ec-code/1.2.4.2 v15 http://identifiers.org/ec-code/6.2.1.4 v16 http://identifiers.org/ec-code/1.3.5.1 v17 http://identifiers.org/ec-code/4.2.1.2 v18 http://identifiers.org/ec-code/1.1.1.37 v2 http://identifiers.org/ec-code/2.7.1.11 v20 http://identifiers.org/ec-code/2.6.1.2 v21 http://identifiers.org/ec-code/2.6.1.1 v24 http://identifiers.org/ec-code/2.7.4.6 v25 http://identifiers.org/ec-code/1.10.2.2 v26 http://identifiers.org/ec-code/1.9.3.1 v27 http://identifiers.org/ec-code/2.3.3.3 v27 http://identifiers.org/ec-code/2.3.3.1 v28 http://identifiers.org/ec-code/3.6.1.3 v28 http://identifiers.org/ec-code/3.6.1.5 v29 http://identifiers.org/ec-code/4.2.1.3 v3 http://identifiers.org/ec-code/4.1.2.13 v31 http://identifiers.org/ec-code/1.1.1.37 v32 http://identifiers.org/ec-code/2.6.1.1 v34 http://identifiers.org/ec-code/1.5.5.1 v35 http://identifiers.org/ec-code/1.8.1.7 v36 http://identifiers.org/ec-code/6.4.1.1 v37 http://identifiers.org/ec-code/1.1.99.5 v38 http://identifiers.org/ec-code/1.1.1.8 v39 http://identifiers.org/ec-code/1.1.1.40 v4 http://identifiers.org/ec-code/1.2.1.12 v41 http://identifiers.org/ec-code/1.1.1.42 v44 http://identifiers.org/ec-code/1.1.1.40 v5 http://identifiers.org/ec-code/5.4.2.4 v5 http://identifiers.org/ec-code/5.4.2.1 v6 http://identifiers.org/ec-code/2.7.1.40 v7 http://identifiers.org/ec-code/1.1.1.27 v9 http://identifiers.org/ec-code/1.2.4.1 end process annotations begin species annotations ADP http://identifiers.org/kegg.compound/C0008 ADP_cyt http://identifiers.org/kegg.compound/C0008 AMP http://identifiers.org/kegg.compound/C00020 AMP http://identifiers.org/chebi/CHEBI:16027 ATP http://identifiers.org/kegg.compound/C0002 ATP_cyt http://identifiers.org/kegg.compound/C0002 Acetyl_CoA http://identifiers.org/kegg.compound/C00024 Acetyl_CoA http://identifiers.org/chebi/CHEBI:15351 Acetyl_CoA_cyt http://identifiers.org/kegg.compound/C00024 Acetyl_CoA_cyt http://identifiers.org/chebi/CHEBI:15351 Ala http://identifiers.org/kegg.compound/C00041 Ala http://identifiers.org/chebi/CHEBI:16977 Asp http://identifiers.org/kegg.compound/C00049 Asp http://identifiers.org/chebi/CHEBI:17053 Asp_cyt http://identifiers.org/kegg.compound/C00049 Asp_cyt http://identifiers.org/chebi/CHEBI:17053 CO2 http://identifiers.org/kegg.compound/C00011 CO2 http://identifiers.org/chebi/CHEBI:16526 Cit http://identifiers.org/kegg.compound/C00158 Cit http://identifiers.org/chebi/CHEBI:30769 Cit_cyt http://identifiers.org/kegg.compound/C00158 Cit_cyt http://identifiers.org/chebi/CHEBI:30769 CoA http://identifiers.org/kegg.compound/C00010 CoA http://identifiers.org/chebi/CHEBI:15346 CoA_cyt http://identifiers.org/kegg.compound/C00010 CoA_cyt http://identifiers.org/chebi/CHEBI:15346 Cytc2p http://identifiers.org/chebi/CHEBI:15991 Cytc2p http://identifiers.org/kegg.compound/C00125 Cytc3p http://identifiers.org/chebi/CHEBI:16928 Cytc3p http://identifiers.org/kegg.compound/C00126 DHAP http://identifiers.org/kegg.compound/C00111 DHAP http://identifiers.org/chebi/CHEBI:16108 DPG http://identifiers.org/kegg.compound/C00236 DPG http://identifiers.org/chebi/CHEBI:16001 ETFox http://identifiers.org/kegg.compound/C04253 ETFred http://identifiers.org/kegg.compound/C04570 F6P http://identifiers.org/kegg.compound/C00085 F6P http://identifiers.org/chebi/CHEBI:15946 FAD http://identifiers.org/kegg.compound/C00016 FAD http://identifiers.org/chebi/CHEBI:16238 FADH2 http://identifiers.org/kegg.compound/C01352 FADH2 http://identifiers.org/chebi/CHEBI:17877 FBP http://identifiers.org/kegg.compound/C00354 FBP http://identifiers.org/chebi/CHEBI:16905 Fum http://identifiers.org/kegg.compound/C00122 Fum http://identifiers.org/chebi/CHEBI:18012 G3P http://identifiers.org/kegg.compound/C00093 G3P http://identifiers.org/chebi/CHEBI:15978 GAP http://identifiers.org/kegg.compound/C00118 GAP http://identifiers.org/chebi/CHEBI:29052 GDP http://identifiers.org/kegg.compound/C00035 GDP http://identifiers.org/chebi/CHEBI:17552 GLC http://identifiers.org/kegg.compound/C00267 GLC http://identifiers.org/chebi/CHEBI:17925 GTP http://identifiers.org/kegg.compound/C00044 GTP http://identifiers.org/chebi/CHEBI:15996 Glu http://identifiers.org/kegg.compound/C00025 Glu http://identifiers.org/chebi/CHEBI:16015 Glu_cyt http://identifiers.org/kegg.compound/C00025 Glu_cyt http://identifiers.org/chebi/CHEBI:16015 H2O http://identifiers.org/kegg.compound/C00001 H2O http://identifiers.org/chebi/CHEBI:15377 IsoCit http://identifiers.org/kegg.compound/C00311 IsoCit http://identifiers.org/chebi/CHEBI:30887 IsoCitcyt http://identifiers.org/kegg.compound/C00311 IsoCitcyt http://identifiers.org/chebi/CHEBI:30887 LAC http://identifiers.org/kegg.compound/C00186 LAC http://identifiers.org/chebi/CHEBI:422 Mal http://identifiers.org/kegg.compound/C00149 Mal http://identifiers.org/chebi/CHEBI:30797 Mal_cyt http://identifiers.org/kegg.compound/C00149 Mal_cyt http://identifiers.org/chebi/CHEBI:30797 NAD http://identifiers.org/chebi/CHEBI:15846 NAD http://identifiers.org/kegg.compound/C00003 NADH http://identifiers.org/kegg.compound/C00004 NADH http://identifiers.org/chebi/CHEBI:16908 NADH_cyt http://identifiers.org/chebi/CHEBI:16908 NADH_cyt http://identifiers.org/kegg.compound/C00004 NADPH http://identifiers.org/kegg.compound/C00005 NADPH http://identifiers.org/chebi/CHEBI:16474 NADPH_cyt http://identifiers.org/chebi/CHEBI:16474 NADPH_cyt http://identifiers.org/kegg.compound/C00005 NADP_cyt http://identifiers.org/chebi/CHEBI:18009 NADP_cyt http://identifiers.org/kegg.compound/C00006 NADP_p http://identifiers.org/kegg.compound/C00006 NADP_p http://identifiers.org/chebi/CHEBI:18009 NAD_p http://identifiers.org/kegg.compound/C00003 NAD_p http://identifiers.org/chebi/CHEBI:15846 OG http://identifiers.org/kegg.compound/C00026 OG http://identifiers.org/chebi/CHEBI:30915 OG_cyt http://identifiers.org/kegg.compound/C00026 OG_cyt http://identifiers.org/chebi/CHEBI:30915 OXA http://identifiers.org/kegg.compound/C00036 OXA http://identifiers.org/chebi/CHEBI:30744 OXA_cyt http://identifiers.org/kegg.compound/C00036 OXA_cyt http://identifiers.org/chebi/CHEBI:30744 PEP http://identifiers.org/kegg.compound/C00074 PEP http://identifiers.org/chebi/CHEBI:18021 PYR_cyt http://identifiers.org/kegg.compound/C00022 PYR_cyt http://identifiers.org/chebi/CHEBI:32816 Pi http://identifiers.org/kegg.compound/C00009 Pi http://identifiers.org/chebi/CHEBI:18367 Pyr http://identifiers.org/kegg.compound/C00022 Pyr http://identifiers.org/chebi/CHEBI:32816 Q http://identifiers.org/chebi/CHEBI:16389 Q http://identifiers.org/kegg.compound/C00399 QH2 http://identifiers.org/chebi/CHEBI:17976 QH2 http://identifiers.org/kegg.compound/C00390 SCoA http://identifiers.org/kegg.compound/C00091 SCoA http://identifiers.org/chebi/CHEBI:15380 Suc http://identifiers.org/kegg.compound/C00042 Suc http://identifiers.org/chebi/CHEBI:15741 end species annotations begin units end units