begin name fisher2 end name begin reactions R1 {1.0}NFATPiNuc + {1.0}ActCNuc = {1.0}ActCNuc + {1.0}NFATNuc R10 {1.0}NFATPiCyt = {1.0}NFATPiNuc R11 {1.0}NFATActCCyt = {1.0}ActCCyt + {1.0}NFATCyt R12 {1.0}NFATPiCyt + {1.0}ActCCyt = {1.0}ActCCyt + {1.0}NFATCyt R13 {3.0}$CaCyt + {1.0}InactCCyt = {1.0}ActCCyt R14 {3.0}$CaNuc + {1.0}InactCNuc = {1.0}ActCNuc R15 {1.0}InactCCyt = {1.0}InactCNuc R16 {1.0}$CaCyt = {1.0}$CaNuc R17 {1.0}NFATPiActCCyt = {1.0}NFATPiActCNuc R2 {1.0}ActCNuc + {1.0}NFATNuc = {1.0}NFATActCNuc R3 {1.0}NFATNuc = {1.0}NFATCyt R4 {1.0}ActCNuc = {1.0}ActCCyt R5 {1.0}NFATActCNuc = {1.0}NFATPiActCNuc R6 {1.0}NFATPiActCNuc = {1.0}ActCNuc + {1.0}NFATPiNuc R7 {1.0}NFATActCNuc = {1.0}NFATActCCyt R8 {1.0}NFATActCCyt = {1.0}NFATPiActCCyt R9 {1.0}NFATPiActCCyt = {1.0}ActCCyt + {1.0}NFATPiCyt end reactions begin rate equations R1 = nucleus*(-(k2*NFATNuc[t]) + k1*NFATPiNuc[t]) R10 = cytosol*k3*NFATPiCyt[t] - k4*nucleus*NFATPiNuc[t] R11 = cytosol*(k15*NFATActCCyt[t] - k16*ActCCyt[t]*NFATCyt[t]) R12 = cytosol*(-(k2*NFATCyt[t]) + k1*NFATPiCyt[t]) R13 = cytosol*(-(k20*ActCCyt[t]) + CaCyt^3*k19*InactCCyt[t]) R14 = nucleus*(-(k20*ActCNuc[t]) + CaNuc^3*k19*InactCNuc[t]) R15 = cytosol*k5*InactCCyt[t] - k6*nucleus*InactCNuc[t] R16 = CaCyt*cytosol*k21 - CaNuc*k22*nucleus R17 = cytosol*k7*NFATPiActCCyt[t] - k8*nucleus*NFATPiActCNuc[t] R2 = nucleus*(-(k15*NFATActCNuc[t]) + k16*ActCNuc[t]*NFATNuc[t]) R3 = -(cytosol*k17*NFATCyt[t]) + k18*nucleus*NFATNuc[t] R4 = -(cytosol*k5*ActCCyt[t]) + k6*nucleus*ActCNuc[t] R5 = nucleus*(k14*NFATActCNuc[t] - k13*NFATPiActCNuc[t]) R6 = nucleus*(k12*NFATPiActCNuc[t] - k11*ActCNuc[t]*NFATPiNuc[t]) R7 = -(cytosol*k9*NFATActCCyt[t]) + k10*nucleus*NFATActCNuc[t] R8 = cytosol*(k14*NFATActCCyt[t] - k13*NFATPiActCCyt[t]) R9 = cytosol*(k12*NFATPiActCCyt[t] - k11*ActCCyt[t]*NFATPiCyt[t]) end rate equations begin parameters TimeinSeconds = 100.0 k1 = "2.56e-05" k10 = 0.005 k11 = 6.63 k12 = 0.00168 k13 = 0.5 k14 = 0.00256 k15 = 0.00168 k16 = 6.63 k17 = 0.0015 k18 = 0.00096 k19 = 1.0 k2 = 0.00256 k20 = 1.0 k21 = 0.21 k22 = 0.5 k3 = 0.005 k4 = 0.5 k5 = 0.0019 k6 = 0.00092 k7 = 0.005 k8 = 0.5 k9 = 0.5 CaCyt = 1.0 CaNuc = 1.0 cytosol = "2.69e-13" nucleus = "1.13e-13" end parameters begin initial conditions ActCCyt[0] = ActCCyti ActCNuc[0] = ActCNuci InactCCyt[0] = InactCCyti InactCNuc[0] = InactCNuci NFATActCCyt[0] = NFATActCCyti NFATActCNuc[0] = NFATActCNuci NFATCyt[0] = NFATCyti NFATNuc[0] = NFATNuci NFATPiActCCyt[0] = NFATPiActCCyti NFATPiActCNuc[0] = NFATPiActCNuci NFATPiCyt[0] = NFATPiCyti NFATPiNuc[0] = NFATPiNuci end initial conditions begin initial values ActCCyti = 9.1e-06 ActCNuci = 5.05e-05 InactCCyti = 0.0097108 InactCNuci = 0.049198 NFATActCCyti = 6.1e-06 NFATActCNuci = 0.0009477 NFATCyti = 0.0001101 NFATNuci = 0.0005219 NFATPiActCCyti = 2.2e-06 NFATPiActCNuci = 2.5e-06 NFATPiCyti = 0.0094397 NFATPiNuci = 0.0002272 end initial values begin assignment rules end assignment rules begin function definitions end function definitions begin events event_0000001 = (-t + TimeinSeconds <= 0 && t < 1500, {CaCyt -> 1, CaNuc -> 1, TimeinSeconds -> 100 + TimeinSeconds}, 0) event_0000003 = (t >= 1500, {CaCyt -> 0.1, CaNuc -> 0.1}, 0) event_0000002 = (-t + TimeinSeconds <= 90 && t < 1500, {CaCyt -> 0.1, CaNuc -> 0.1}, 0) end events begin process annotations R1 http://identifiers.org/ec-code/3.1.3.16 R1 http://identifiers.org/go/GO:0004722 R1 http://identifiers.org/go/GO:0004723 R1 http://identifiers.org/kegg.reaction/R00164 R12 http://identifiers.org/ec-code/3.1.3.16 R12 http://identifiers.org/go/GO:0004723 R3 http://identifiers.org/go/GO:0051531 end process annotations begin species annotations Ca_Cyt http://identifiers.org/chebi/CHEBI:29108 Ca_Cyt http://identifiers.org/kegg.compound/C00076 Ca_Nuc http://identifiers.org/chebi/CHEBI:29108 Ca_Nuc http://identifiers.org/kegg.compound/C00076 end species annotations begin units end units