begin name chance1 end name begin reactions r1 {1.0}GLU + {1.0}ENZ = {1.0}ENG r10 {1.0}MOX + {1.0}DPN = {1.0}MOD r11 {1.0}DGA + {1.0}ADP = {1.0}TP1 + {1.0}PGA r12 {1.0}PGA + {1.0}ADP = {1.0}TP1 + {1.0}PYR r13 {1.0}PYR + {1.0}DPH = {1.0}LAC + {1.0}DPN r14 {1.0}LAC + {1.0}DPN = {1.0}PYR + {1.0}DPH r15 {1.0}PYR + {4.0}DIN = {4.0}DIH r16 {1.0}DIH + {3.0}XI + {1.0}OXY = {3.0}XSI + {1.0}DIN r17 {1.0}XSI + {1.0}PID = {1.0}XSP r18 {1.0}XSP + {1.0}ADP = {1.0}TP2 + {1.0}XI r19 {1.0}XSI = {1.0}XI r2 {1.0}ENG + {1.0}TP1 = {1.0}ADP + {1.0}GLP + {1.0}ENZ r20 {1.0}TP2 = {1.0}TP1 r21 {1.0}TP1 + {1.0}PUE = {1.0}PPP r22 {1.0}PPP = {1.0}ADP + {1.0}PUE + {1.0}PID r3 {1.0}GLP + {1.0}ETZ = {1.0}ETG r4 {1.0}ETG + {1.0}TP1 = {1.0}GPP + {1.0}ETZ + {1.0}ADP r5 {1.0}GPP = {1.0}GAP + {1.0}DHA r6 {1.0}DHA + {1.0}DPH = {1.0}AGP + {1.0}DPN r7 {1.0}AGP + {1.0}DPN = {1.0}DHA + {1.0}DPH r8 {1.0}GAP + {1.0}MOD = {1.0}MOB + {1.0}DPH r9 {1.0}MOB + {1.0}PID = {1.0}DGA + {1.0}MOX end reactions begin rate equations r1 = (cell*r1k*ENZ[t]*GLU[t])/1000000 r10 = (cell*r10k*DPN[t]*MOX[t])/1000000 r11 = (cell*r11k*ADP[t]*DGA[t])/1000000 r12 = (cell*r12k*ADP[t]*PGA[t])/1000000 r13 = (cell*r13k*DPH[t]*PYR[t])/1000000 r14 = (cell*r14k*DPN[t]*LAC[t])/1000000 r15 = (cell*r15k*DIN[t]*PYR[t])/1000000 r16 = (cell*r16k*DIH[t]*OXY[t]*XI[t])/1000000 r17 = (cell*r17k*PID[t]*XSI[t])/1000000 r18 = (cell*r18k*ADP[t]*XSP[t])/1000000 r19 = (cell*r19k*DBP[t]*XSI[t])/1000000 r2 = (cell*r2k*ENG[t]*TP1[t])/1000000 r20 = (cell*r20k*DBP[t]*TP2[t])/1000000 r21 = (cell*r21k*PUE[t]*TP1[t])/1000000 r22 = (cell*r22k*PPP[t])/1000000 r3 = (cell*r3k*ETZ[t]*GLP[t])/1000000 r4 = (cell*r4k*ETG[t]*TP1[t])/1000000 r5 = (cell*r5k*GPP[t])/1000000 r6 = (cell*r6k*DHA[t]*DPH[t])/1000000 r7 = (cell*r7k*AGP[t]*DPN[t])/1000000 r8 = (cell*r8k*GAP[t]*MOD[t])/1000000 r9 = (cell*r9k*MOB[t]*PID[t])/1000000 end rate equations begin parameters r1k = 3000000000.0 r2k = 10000000000.0 r3k = 40000000000.0 r4k = 40000000000.0 r5k = 100000.0 r6k = 2000000000.0 r7k = 80000000.0 r8k = 600000000000.0 r9k = 400000000.0 r10k = 6000000000.0 r11k = 10000000000.0 r12k = 5000000000.0 r13k = 500000000.0 r14k = 10000000.0 r15k = 20000000.0 r16k = 7500000000000.0 r17k = 400000000.0 r18k = 15000000000.0 r19k = 120000000.0 r20k = 4000000.0 r21k = 3000000000.0 r22k = 2000000.0 cell = 1.0 end parameters begin initial conditions ADP[0] = ADPi AGP[0] = AGPi DBP[0] = DBPi DGA[0] = DGAi DHA[0] = DHAi DIH[0] = DIHi DIN[0] = DINi DPH[0] = DPHi DPN[0] = DPNi ENG[0] = ENGi ENZ[0] = ENZi ETG[0] = ETGi ETZ[0] = ETZi GAP[0] = GAPi GLP[0] = GLPi GLU[0] = GLUi GPP[0] = GPPi LAC[0] = LACi MOB[0] = MOBi MOD[0] = MODi MOX[0] = MOXi OXY[0] = OXYi PGA[0] = PGAi PID[0] = PIDi PPP[0] = PPPi PUE[0] = PUEi PYR[0] = PYRi TP1[0] = TP1i TP2[0] = TP2i XI[0] = XIi XSI[0] = XSIi XSP[0] = XSPi end initial conditions begin initial values ADPi = 0.0001 AGPi = 0.0 DBPi = 0.0 DGAi = 0.0 DHAi = 0.0 DIHi = 3e-05 DINi = 3e-05 DPHi = 0.0001 DPNi = 0.0001 ENGi = 0.0 ENZi = 1e-05 ETGi = 0.0 ETZi = 1e-05 GAPi = 0.0 GLPi = 0.0 GLUi = 0.0 GPPi = 0.0 LACi = 0.001 MOBi = 0.0 MODi = 5e-05 MOXi = 0.0 OXYi = 0.0005 PGAi = 0.0 PIDi = 0.004 PPPi = 1e-06 PUEi = 2e-06 PYRi = 0.001 TP1i = 0.0005 TP2i = 0.0005 XIi = 2e-05 XSIi = 2e-05 XSPi = 2e-05 end initial values begin assignment rules GPP0 := 1000.*GPP[t] ETG0 := 100000*ETG[t] ETZ0 := 100000*ETZ[t] GLP0 := 1000.*GLP[t] ADP0 := 1000.*ADP[t] TP10 := 666.6666666666666*TP1[t] ENG0 := 98039.2156862745*ENG[t] ENZ0 := 98039.2156862745*ENZ[t] GLU0 := 333.3333333333333*GLU[t] MOX0 := 20000*MOX[t] MOB0 := 10000.*MOB[t] MOD0 := 20000*MOD[t] AGP0 := 769.2307692307693*AGP[t] PPP0 := 0.32679738562091504*PPP[t] PUE0 := 326797.38562091504*PUE[t] DBP0 := 40.*DBP[t] TP20 := 666.6666666666666*TP2[t] XSP0 := (50000*XSP[t])/3 OXY0 := 2000.*OXY[t] XSI0 := (50000*XSI[t])/3 XI0 := (50000*XI[t])/3 DIH0 := (100000*DIH[t])/7 DIN0 := (100000*DIN[t])/7 LAC0 := 833.3333333333334*LAC[t] PYR0 := 500.*PYR[t] PGA0 := 5000.*PGA[t] DGA0 := 5000.*DGA[t] PID0 := 200.*PID[t] DPH0 := 5000.*DPH[t] DPN0 := 4000.*DPN[t] DHA0 := 769.2307692307693*DHA[t] GAP0 := 5000.*GAP[t] end assignment rules begin function definitions end function definitions begin events e_1 = (t >= 64, {GLU[t] -> 0.003}, 0) e_2 = (t >= 119, {DBP[t] -> 0.025}, 0) end events begin process annotations end process annotations begin species annotations ADP http://identifiers.org/obo.chebi/CHEBI:16761 ADP http://identifiers.org/kegg.compound/C00008 AGP http://identifiers.org/kegg.compound/C00623 AGP http://identifiers.org/obo.chebi/CHEBI:16221 DBP http://identifiers.org/obo.chebi/CHEBI:33625 DGA http://identifiers.org/kegg.compound/C00236 DGA http://identifiers.org/obo.chebi/CHEBI:16001 DHA http://identifiers.org/kegg.compound/C00111 DHA http://identifiers.org/obo.chebi/CHEBI:16108 DIH http://identifiers.org/obo.chebi/CHEBI:16908 DIH http://identifiers.org/kegg.compound/C00004 DIN http://identifiers.org/kegg.compound/C00003 DIN http://identifiers.org/obo.chebi/CHEBI:15846 DPH http://identifiers.org/obo.chebi/CHEBI:16908 DPH http://identifiers.org/kegg.compound/C00004 DPN http://identifiers.org/obo.chebi/CHEBI:15846 DPN http://identifiers.org/kegg.compound/C00003 GAP http://identifiers.org/obo.chebi/CHEBI:29052 GAP http://identifiers.org/kegg.compound/C00118 GLP http://identifiers.org/obo.chebi/CHEBI:4170 GLP http://identifiers.org/kegg.compound/C00092 GLU http://identifiers.org/kegg.compound/C00293 GLU http://identifiers.org/obo.chebi/CHEBI:17234 GPP http://identifiers.org/kegg.compound/C05378 GPP http://identifiers.org/obo.chebi/CHEBI:28013 LAC http://identifiers.org/kegg.compound/C00186 LAC http://identifiers.org/obo.chebi/CHEBI:422 OXY http://identifiers.org/kegg.compound/C00007 OXY http://identifiers.org/obo.chebi/CHEBI:15379 PGA http://identifiers.org/kegg.compound/C00197 PGA http://identifiers.org/obo.chebi/CHEBI:17794 PID http://identifiers.org/obo.chebi/CHEBI:18367 PID http://identifiers.org/kegg.compound/C00009 PYR http://identifiers.org/kegg.compound/C00022 PYR http://identifiers.org/obo.chebi/CHEBI:32816 TP1 http://identifiers.org/obo.chebi/CHEBI:15422 TP1 http://identifiers.org/kegg.compound/C00002 TP2 http://identifiers.org/kegg.compound/C00002 TP2 http://identifiers.org/obo.chebi/CHEBI:15422 end species annotations begin units end units