begin name calzone1 end name begin reactions Nuclei1 {1.0}$EXTERNAL = {1.0}N R1 {1.0}$EXTERNAL = {1.0}MPFc R10 {1.0}Stgm = {1.0}$EXTERNAL R12 {1.0}$EXTERNAL = {1.0}Stgc R13 {1.0}Stgc = {1.0}StgPc R14 {1.0}StgPc = {1.0}Stgc R15 {1.0}Stgc = {1.0}$EXTERNAL R16 {1.0}StgPc = {1.0}$EXTERNAL R19 {1.0}MPFc = {1.0}$EXTERNAL R2 {1.0}preMPFc = {1.0}MPFc R20 {1.0}preMPFc = {1.0}$EXTERNAL R21 {1.0}Wee1Pn = {1.0}$EXTERNAL R22 {1.0}$EXTERNAL = {1.0}$EXTERNAL R23 {1.0}Wee1n = {1.0}$EXTERNAL R24 {1.0}Wee1c = {1.0}$EXTERNAL R25 {1.0}StgPn = {1.0}$EXTERNAL R26 {1.0}StgPc = {1.0}$EXTERNAL R27 {1.0}Stgn = {1.0}$EXTERNAL R28 {1.0}Stgc = {1.0}$EXTERNAL R29 {1.0}preMPFn = {1.0}MPFn R3 {1.0}MPFc = {1.0}preMPFc R30 {1.0}MPFn = {1.0}preMPFn R33 {1.0}preMPFn = {1.0}$EXTERNAL R34 {1.0}MPFn = {1.0}$EXTERNAL R37 {1.0}IEa1 = {1.0}$EXTERNAL R38 {1.0}$EXTERNAL = {1.0}IEa1 R39 {1.0}$EXTERNAL = {1.0}FZYa R40 {1.0}FZYa = {1.0}$EXTERNAL R41 {1.0}Wee1n = {1.0}Wee1Pn R42 {1.0}Wee1Pn = {1.0}Wee1n R43 {1.0}Stgn = {1.0}StgPn R44 {1.0}StgPn = {1.0}Stgn R45 {1.0}Stgn = {1.0}$EXTERNAL R46 {1.0}StgPn = {1.0}$EXTERNAL R6 {1.0}preMPFc = {1.0}$EXTERNAL R7 {1.0}MPFc = {1.0}$EXTERNAL R8 {1.0}Wee1c = {1.0}$EXTERNAL R9 {1.0}$EXTERNAL = {1.0}Wee1c 16 {1.0}$EXTERNAL = {1.0}MPFn 18 {1.0}$EXTERNAL = {1.0}preMPFn 1821 {1.0}$EXTERNAL = {1.0}$EXTERNAL 20 {1.0}$EXTERNAL = {1.0}Wee1Pn 22 {1.0}$EXTERNAL = {1.0}Wee1c 24 {1.0}$EXTERNAL = {1.0}Wee1n 26 {1.0}$EXTERNAL = {1.0}StgPc 28 {1.0}$EXTERNAL = {1.0}StgPn 30 {1.0}$EXTERNAL = {1.0}Stgc 32 {1.0}$EXTERNAL = {1.0}Stgn 50 {1.0}$EXTERNAL = {1.0}Xm 51 {1.0}$EXTERNAL = {1.0}Xp exportofMPFfromnucleus1 {1.0}MPFn = {1.0}$EXTERNAL exportofpreMPFnfromnucleus1 {1.0}preMPFn = {1.0}$EXTERNAL importofMPFintocytoplasm1 {1.0}$EXTERNAL = {1.0}MPFc importofpreMPFintocytoplaslm1 {1.0}$EXTERNAL = {1.0}preMPFc end reactions begin rate equations Nuclei1 = 0 R1 = cytoplasm*ksc R10 = nuclei*((kdmp*Stgm[t])/(Jm + Stgm[t]) + kdm*Stgm[t]*Xp[t]) R12 = cytoplasm*ksstg*Stgm[t] R13 = (cytoplasm*(kastgp + kastg*MPFc[t])*Stgc[t])/(Jastg + Stgc[t]) R14 = (cytoplasm*kistg*StgPc[t])/(Jistg + StgPc[t]) R15 = cytoplasm*kdstg*Stgc[t] R16 = cytoplasm*kdstg*StgPc[t] R19 = (cytoplasm*E1*kt*MPFc[t]*N[t])/(1 - E1*N[t]) R2 = cytoplasm*preMPFc[t]*(kstgp + kstg*StgPc[t]) R20 = (cytoplasm*E1*kt*N[t]*preMPFc[t])/(1 - E1*N[t]) R21 = koutw1*nuclei*Wee1Pn[t] R22 = (cytoplasm*E1*kinw1*Wee1Pc*N[t])/(1 - E1*N[t]) R23 = koutw1*nuclei*Wee1n[t] R24 = (cytoplasm*E1*kinw1*N[t]*Wee1c[t])/(1 - E1*N[t]) R25 = kouts1*nuclei*StgPn[t] R26 = (cytoplasm*E1*kins1*N[t]*StgPc[t])/(1 - E1*N[t]) R27 = kouts1*nuclei*Stgn[t] R28 = (cytoplasm*E1*kins1*N[t]*Stgc[t])/(1 - E1*N[t]) R29 = nuclei*preMPFn[t]*(kstgp + kstg*StgPn[t]) R3 = cytoplasm*MPFc[t]*(kweep + kwee*Wee1c[t]) R30 = nuclei*MPFn[t]*(kweep + kwee*Wee1n[t]) R33 = nuclei*(kdnp + kdn*FZYa[t])*preMPFn[t] R34 = nuclei*(kdnp + kdn*FZYa[t])*MPFn[t] R37 = (kiie*nuclei*IEa1[t])/(Jiie + IEa1[t]) R38 = (kaie*nuclei*(1 - IEa1[t])*MPFn[t])/(1 + Jaie - IEa1[t]) R39 = (kafzy*nuclei*(1 - FZYa[t])*IEa1[t])/(1 + Jafzy - FZYa[t]) R40 = (kifzy*nuclei*FZYa[t])/(Jifzy + FZYa[t]) R41 = (nuclei*(kiweep + kiwee*MPFn[t])*Wee1n[t])/(Jiwee + Wee1n[t]) R42 = (kawee*nuclei*Wee1Pn[t])/(Jawee + Wee1Pn[t]) R43 = (nuclei*(kastgp + kastg*MPFn[t])*Stgn[t])/(Jastg + Stgn[t]) R44 = (kistg*nuclei*StgPn[t])/(Jistg + StgPn[t]) R45 = kdstg*nuclei*Stgn[t] R46 = kdstg*nuclei*StgPn[t] R6 = cytoplasm*kdc*preMPFc[t] R7 = cytoplasm*kdc*MPFc[t] R8 = (cytoplasm*(kiweep + kiwee*MPFc[t])*Wee1c[t])/(Jiwee + Wee1c[t]) R9 = (cytoplasm*kawee*Wee1Pc)/(Jawee + Wee1Pc) 16 = cytoplasm*kt*MPFc[t] 18 = cytoplasm*kt*preMPFc[t] 1821 = (E1*koutw1*nuclei*N[t]*Wee1Pn[t])/(1 - E1*N[t]) 20 = cytoplasm*kinw1*Wee1Pc 22 = (E1*koutw1*nuclei*N[t]*Wee1n[t])/(1 - E1*N[t]) 24 = cytoplasm*kinw1*Wee1c[t] 26 = (E1*kouts1*nuclei*N[t]*StgPn[t])/(1 - E1*N[t]) 28 = cytoplasm*kins1*StgPc[t] 30 = (E1*kouts1*nuclei*N[t]*Stgn[t])/(1 - E1*N[t]) 32 = cytoplasm*kins1*Stgc[t] 50 = ksxm1*nuclei*N[t] 51 = cytoplasm*ksxp1*Xm[t] exportofMPFfromnucleus1 = kout1*nuclei*MPFn[t] exportofpreMPFnfromnucleus1 = kout1*nuclei*preMPFn[t] importofMPFintocytoplasm1 = (E1*kout1*nuclei*MPFn[t]*N[t])/(1 - E1*N[t]) importofpreMPFintocytoplaslm1 = (E1*kout1*nuclei*N[t]*preMPFn[t])/(1 - E1*N[t]) end rate equations begin parameters E1 = "7e-05" Jafzy = 0.01 Jaie = 0.01 Jastg = 0.05 Jawee = 0.05 Jifzy = 0.01 Jiie = 0.01 Jistg = 0.05 Jiwee = 0.05 Jm = 0.05 StringT = 0.8 Wee1T = 0.8 factor1 = 1.95 kafzy = 1.0 kaie = 1.0 kastg = 1.0 kastgp = 0.0 kawee = 0.3 kdc = 0.01 kdm = 0.2 kdmp = 0.002 kdn = 1.5 kdnp = 0.01 kdstg = 0.0 kez1 = 0.5 kifzy = 0.2 kiie = 0.4 kins1 = 0.08 kinw1 = 0.04 kistg = 0.3 kiwee = 1.0 kiweep = 0.01 kout1 = 0.0 kouts1 = 0.02 koutw1 = 0.01 ksc = 0.01 ksstg = 0.0 kstg = 2.0 kstgp = 0.2 ksxm1 = 0.0005 ksxp1 = 0.001 kt = 0.15 kwee = 1.0 kweep = 0.005 cytoplasm = 1.0 nuclei = 1.0 end parameters begin initial conditions FZYa[0] = FZYai IEa1[0] = IEa1i MPFc[0] = MPFci MPFn[0] = MPFni N[0] = Ni StgPc[0] = StgPci StgPn[0] = StgPni Stgc[0] = Stgci Stgm[0] = Stgmi Stgn[0] = Stgni Wee1Pn[0] = Wee1Pni Wee1c[0] = Wee1ci Wee1n[0] = Wee1ni Xm[0] = Xmi Xp[0] = Xpi preMPFc[0] = preMPFci preMPFn[0] = preMPFni end initial conditions begin initial values FZYai = 0.0 IEa1i = 0.0 MPFci = 1.0 MPFni = 0.0 Ni = 1.0 StgPci = 0.8 StgPni = 0.0 Stgci = 0.0 Stgmi = 1.0 Stgni = 0.0 Wee1Pni = 0.0 Wee1ci = 0.0 Wee1ni = 0.0 Xmi = 0.0 Xpi = 0.0 preMPFci = 0.0 preMPFni = 0.0 end initial values begin assignment rules Wee1Pc := -Wee1c[t] + (Wee1T - E1*N[t]*(Wee1n[t] + Wee1Pn[t]))/(1 - E1*N[t]) StgPT := (1 - E1*N[t])*StgPc[t] + E1*N[t]*StgPn[t] CycBT := (1 - E1*N[t])*(MPFc[t] + preMPFc[t]) + E1*N[t]*(MPFn[t] + preMPFn[t]) end assignment rules begin function definitions end function definitions begin events unnamed = (FZYa[t] >= kez1, {MPFc[t] -> (MPFc[t]*(1 - E1*N[t]))/(1 - 1.95*E1*N[t]), StgPn[t] -> 0.5128205128205129*StgPn[t], Stgc[t] -> ((1 - E1*N[t])*Stgc[t])/(1 - 1.95*E1*N[t]), StgPc[t] -> ((1 - E1*N[t])*StgPc[t])/(1 - 1.95*E1*N[t]), Stgn[t] -> 0.5128205128205129*Stgn[t], Wee1c[t] -> ((1 - E1*N[t])*Wee1c[t])/(1 - 1.95*E1*N[t]), Wee1Pn[t] -> 0.5128205128205129*Wee1Pn[t], Wee1n[t] -> 0.5128205128205129*Wee1n[t], preMPFn[t] -> 0.5128205128205129*preMPFn[t], MPFn[t] -> 0.5128205128205129*MPFn[t], N[t] -> factor1*N[t]}, 0) end events begin process annotations end process annotations begin species annotations FZYa http://identifiers.org/uniprot/Q24044 FZYa http://identifiers.org/interpro/IPR000002 StgPc http://identifiers.org/uniprot/P20483 StgPn http://identifiers.org/uniprot/P20483 StgPn http://identifiers.org/interpro/IPR000751 Stgc http://identifiers.org/uniprot/P20483 Stgn http://identifiers.org/uniprot/P20483 Stgn http://identifiers.org/interpro/IPR000751 Wee1Pc http://identifiers.org/uniprot/P54350 Wee1Pc http://identifiers.org/uniprot/P30291 Wee1Pn http://identifiers.org/uniprot/P54350 Wee1Pn http://identifiers.org/uniprot/P30291 Wee1c http://identifiers.org/uniprot/P54350 Wee1c http://identifiers.org/uniprot/P30291 Wee1n http://identifiers.org/uniprot/P54350 Wee1n http://identifiers.org/uniprot/P30291 end species annotations begin units end units