begin name butenas1 end name begin reactions R1 {1.0}TF + {1.0}VII = {1.0}TFVII R10 {1.0}IIa + {1.0}VIII = {1.0}IIa + {1.0}VIIIa R11 {1.0}IXa + {1.0}VIIIa = {1.0}IXaVIIIa R12 {1.0}IXaVIIIa + {1.0}X = {1.0}IXaVIIIaX R12b {1.0}IXaVIIIaX = {1.0}IXaVIIIa + {1.0}Xa R13 {1.0}VIIIa = {1.0}VIIIa1L + {1.0}VIIIa2 R14 {1.0}IXaVIIIaX = {1.0}VIIIa1L + {1.0}VIIIa2 + {1.0}X + {1.0}IXa R15 {1.0}IXaVIIIa = {1.0}VIIIa1L + {1.0}VIIIa2 + {1.0}IXa R16 {1.0}IIa + {1.0}V = {1.0}IIa + {1.0}Va R17 {1.0}Xa + {1.0}Va = {1.0}XaVa R18 {1.0}XaVa + {1.0}II = {1.0}XaVaII R18b {1.0}XaVaII = {1.0}XaVa + {1.0}mIIa R19 {1.0}mIIa + {1.0}XaVa = {1.0}IIa + {1.0}XaVa R2 {1.0}TF + {1.0}VIIa = {1.0}TFVIIa R20 {1.0}Xa + {1.0}TFPI = {1.0}XaTFPI R21 {1.0}TFVIIaXa + {1.0}TFPI = {1.0}TFVIIaXaTFPI R22 {1.0}TFVIIa + {1.0}XaTFPI = {1.0}TFVIIaXaTFPI R23 {1.0}Xa + {1.0}ATIII = {1.0}XaATIII R24 {1.0}mIIa + {1.0}ATIII = {1.0}mIIaATIII R25 {1.0}IXa + {1.0}ATIII = {1.0}IXaATIII R26 {1.0}IIa + {1.0}ATIII = {1.0}IIaATIII R27 {1.0}TFVIIa + {1.0}ATIII = {1.0}TFVIIaATIII R28 {1.0}IXa + {1.0}X = {1.0}IXa + {1.0}Xa R29 {1.0}mIIa + {1.0}V = {1.0}mIIa + {1.0}Va R3 {1.0}TFVIIa + {1.0}VII = {1.0}TFVIIa + {1.0}VIIa R4 {1.0}Xa + {1.0}VII = {1.0}Xa + {1.0}VIIa R5 {1.0}IIa + {1.0}VII = {1.0}IIa + {1.0}VIIa R6 {1.0}TFVIIa + {1.0}X = {1.0}TFVIIaX R6b {1.0}TFVIIaX = {1.0}TFVIIaXa R7 {1.0}TFVIIa + {1.0}Xa = {1.0}TFVIIaXa R8 {1.0}TFVIIa + {1.0}IX = {1.0}TFVIIaIX R8b {1.0}TFVIIaIX = {1.0}TFVIIa + {1.0}IXa R9 {1.0}Xa + {1.0}II = {1.0}Xa + {1.0}IIa end reactions begin rate equations R1 = compartment1*(-(k1*TFVII[t]) + k2*TF[t]*VII[t]) R10 = compartment1*k17*IIa[t]*VIII[t] R11 = compartment1*(-(k18*IXaVIIIa[t]) + k19*IXa[t]*VIIIa[t]) R12 = compartment1*(-(k20*IXaVIIIaX[t]) + k21*IXaVIIIa[t]*X[t]) R12b = compartment1*k22*IXaVIIIaX[t] R13 = compartment1*(k24*VIIIa[t] - k23*VIIIa1L[t]*VIIIa2[t]) R14 = compartment1*k25*IXaVIIIaX[t] R15 = compartment1*k25*IXaVIIIa[t] R16 = compartment1*k26*IIa[t]*V[t] R17 = compartment1*(k28*Va[t]*Xa[t] - k27*XaVa[t]) R18 = compartment1*(k30*II[t]*XaVa[t] - k29*XaVaII[t]) R18b = compartment1*k31*XaVaII[t] R19 = compartment1*k32*mIIa[t]*XaVa[t] R2 = compartment1*(-(k3*TFVIIa[t]) + k4*TF[t]*VIIa[t]) R20 = compartment1*(k34*TFPI[t]*Xa[t] - k33*XaTFPI[t]) R21 = compartment1*(k36*TFPI[t]*TFVIIaXa[t] - k35*TFVIIaXaTFPI[t]) R22 = compartment1*k37*TFVIIa[t]*XaTFPI[t] R23 = compartment1*k38*ATIII[t]*Xa[t] R24 = compartment1*k39*ATIII[t]*mIIa[t] R25 = compartment1*k40*ATIII[t]*IXa[t] R26 = compartment1*k41*ATIII[t]*IIa[t] R27 = compartment1*k42*ATIII[t]*TFVIIa[t] R28 = compartment1*k43*IXa[t]*X[t] R29 = compartment1*k44*mIIa[t]*V[t] R3 = compartment1*k5*TFVIIa[t]*VII[t] R4 = compartment1*k6*VII[t]*Xa[t] R5 = compartment1*k7*IIa[t]*VII[t] R6 = compartment1*(-(k8*TFVIIaX[t]) + k9*TFVIIa[t]*X[t]) R6b = compartment1*k10*TFVIIaX[t] R7 = compartment1*(-(k11*TFVIIaXa[t]) + k12*TFVIIa[t]*Xa[t]) R8 = compartment1*(k14*IX[t]*TFVIIa[t] - k13*TFVIIaIX[t]) R8b = compartment1*k15*TFVIIaIX[t] R9 = compartment1*k16*II[t]*Xa[t] end rate equations begin parameters k1 = 0.0031 k10 = 6.0 k11 = 19.0 k12 = 22000000.0 k13 = 2.4 k14 = 10000000.0 k15 = 1.8 k16 = 7500.0 k17 = 20000000.0 k18 = 0.005 k19 = 10000000.0 k2 = 3200000.0 k20 = 0.001 k21 = 100000000.0 k22 = 8.2 k23 = 22000.0 k24 = 0.006 k25 = 0.001 k26 = 20000000.0 k27 = 0.2 k28 = 400000000.0 k29 = 103.0 k3 = 0.0031 k30 = 100000000.0 k31 = 63.5 k32 = 15000000.0 k33 = 0.00036 k34 = 900000.0 k35 = 0.00011 k36 = 320000000.0 k37 = 50000000.0 k38 = 1500.0 k39 = 7100.0 k4 = 23000000.0 k40 = 490.0 k41 = 7100.0 k42 = 230.0 k43 = 5700.0 k44 = 3000000.0 k5 = 440000.0 k6 = 13000000.0 k7 = 23000.0 k8 = 1.05 k9 = 25000000.0 compartment1 = 1.0 end parameters begin initial conditions ATIII[0] = ATIIIi II[0] = IIi IIa[0] = IIai IIaATIII[0] = IIaATIIIi IX[0] = IXi IXa[0] = IXai IXaATIII[0] = IXaATIIIi IXaVIIIa[0] = IXaVIIIai IXaVIIIaX[0] = IXaVIIIaXi TF[0] = TFi TFPI[0] = TFPIi TFVII[0] = TFVIIi TFVIIa[0] = TFVIIai TFVIIaATIII[0] = TFVIIaATIIIi TFVIIaIX[0] = TFVIIaIXi TFVIIaX[0] = TFVIIaXi TFVIIaXa[0] = TFVIIaXai TFVIIaXaTFPI[0] = TFVIIaXaTFPIi V[0] = Vi VII[0] = VIIi VIII[0] = VIIIi VIIIa[0] = VIIIai VIIIa1L[0] = VIIIa1Li VIIIa2[0] = VIIIa2i VIIa[0] = VIIai Va[0] = Vai X[0] = Xi Xa[0] = Xai XaATIII[0] = XaATIIIi XaTFPI[0] = XaTFPIi XaVa[0] = XaVai XaVaII[0] = XaVaIIi mIIa[0] = mIIai mIIaATIII[0] = mIIaATIIIi end initial conditions begin initial values ATIIIi = 3.4e-06 IIi = 1.4e-06 IIai = 1e-09 IIaATIIIi = 0.0 IXi = 9e-08 IXai = 2.1e-10 IXaATIIIi = 0.0 IXaVIIIai = 0.0 IXaVIIIaXi = 0.0 TFi = 0.0 TFPIi = 2.5e-09 TFVIIi = 0.0 TFVIIai = 0.0 TFVIIaATIIIi = 0.0 TFVIIaIXi = 0.0 TFVIIaXi = 0.0 TFVIIaXai = 0.0 TFVIIaXaTFPIi = 0.0 Vi = 2e-08 VIIi = 1e-08 VIIIi = 7e-10 VIIIai = 0.0 VIIIa1Li = 0.0 VIIIa2i = 0.0 VIIai = 1e-10 Vai = 0.0 Xi = 1.6e-07 Xai = 9.4e-11 XaATIIIi = 0.0 XaTFPIi = 0.0 XaVai = 0.0 XaVaIIi = 0.0 mIIai = 0.0 mIIaATIIIi = 0.0 end initial values begin assignment rules IIaplus12mIIa := IIa[t] + 1.2*mIIa[t] end assignment rules begin function definitions end function definitions begin events end events begin process annotations end process annotations begin species annotations ATIII http://identifiers.org/uniprot/P01008 II http://identifiers.org/uniprot/P00734 IIa http://identifiers.org/uniprot/P00734 IX http://identifiers.org/uniprot/P00740 IXa http://identifiers.org/uniprot/P00740 TF http://identifiers.org/uniprot/P13726 TFPI http://identifiers.org/uniprot/P10646 V http://identifiers.org/uniprot/P12259 VII http://identifiers.org/uniprot/P08709 VIII http://identifiers.org/uniprot/P00451 VIIIa http://identifiers.org/uniprot/P00451 VIIIa1_L http://identifiers.org/uniprot/P00451 VIIIa2 http://identifiers.org/uniprot/P00451 VIIa http://identifiers.org/uniprot/P08709 Va http://identifiers.org/uniprot/P12259 X http://identifiers.org/uniprot/P00742 Xa http://identifiers.org/uniprot/P00742 mIIa http://identifiers.org/uniprot/P00734 end species annotations begin units end units