begin name
bray1
end name

begin reactions
complexr1 {1.0}TTW = {1.0}TT + {1.0}W
complexr10 {1.0}TTWW = {1.0}TTW + {1.0}W
complexr11 {1.0}WWAA = {1.0}W + {1.0}WAA
complexr12 {1.0}TTWAA = {1.0}TTAA + {1.0}W
complexr2 {1.0}WAA = {1.0}W + {1.0}AA
complexr3 {1.0}TTWAA = {1.0}TT + {1.0}WAA
complexr4 {1.0}TTWWAA = {1.0}TTW + {1.0}WAA
complexr5 {1.0}TTWWAA = {1.0}TTWW + {1.0}AA
complexr6 {1.0}TTWWAA = {1.0}TT + {1.0}WWAA
complexr7 {1.0}TTAA = {1.0}TT + {1.0}AA
complexr8 {1.0}TTWAA = {1.0}TTW + {1.0}AA
complexr9 {1.0}TTWWAA = {1.0}TTWAA + {1.0}W
phosphorylationr1 {1.0}TTWWAA = {1.0}TTWWAAp
phosphorylationr10 {1.0}Bp = {1.0}B
phosphorylationr2 {1.0}AA = {1.0}AAp
phosphorylationr3 {1.0}WAA = {1.0}WAAp
phosphorylationr4 {1.0}WWAA = {1.0}WWAAp
phosphorylationr5 {1.0}TTAA = {1.0}TTAAp
phosphorylationr6 {1.0}TTWAA = {1.0}TTWAAp
phosphorylationr7 {1.0}Y = {1.0}Yp
phosphorylationr8 {1.0}Yp = {1.0}Y
phosphorylationr9 {1.0}Yp + {1.0}Z = {1.0}Y + {1.0}Z
phosphotransferr1 {1.0}B + {1.0}AAp = {1.0}Bp + {1.0}AA
phosphotransferr10 {1.0}Y + {1.0}TTAAp = {1.0}Yp + {1.0}TTAA
phosphotransferr11 {1.0}Y + {1.0}TTWAAp = {1.0}Yp + {1.0}TTWAA
phosphotransferr12 {1.0}Y + {1.0}TTWWAAp = {1.0}Yp + {1.0}TTWWAA
phosphotransferr2 {1.0}B + {1.0}WAAp = {1.0}Bp + {1.0}WAA
phosphotransferr3 {1.0}B + {1.0}WWAAp = {1.0}Bp + {1.0}WWAA
phosphotransferr4 {1.0}B + {1.0}TTAAp = {1.0}Bp + {1.0}TTAA
phosphotransferr5 {1.0}B + {1.0}TTWAAp = {1.0}Bp + {1.0}TTWAA
phosphotransferr6 {1.0}B + {1.0}TTWWAAp = {1.0}Bp + {1.0}TTWWAA
phosphotransferr7 {1.0}Y + {1.0}AAp = {1.0}Yp + {1.0}AA
phosphotransferr8 {1.0}Y + {1.0}WAAp = {1.0}Yp + {1.0}WAA
phosphotransferr9 {1.0}Y + {1.0}WWAAp = {1.0}Yp + {1.0}WWAA
end reactions

begin rate equations
complexr1 = cell*(complexr1k1*TTW[t] - complexr1k2*TT[t]*W[t])
complexr10 = cell*(complexr10k1*TTWW[t] - complexr10k2*TTW[t]*W[t])
complexr11 = cell*(-(complexr11k2*W[t]*WAA[t]) + complexr11k1*WWAA[t])
complexr12 = cell*(complexr12k1*TTWAA[t] - complexr12k2*TTAA[t]*W[t])
complexr2 = cell*(-(complexr2k2*AA[t]*W[t]) + complexr2k1*WAA[t])
complexr3 = cell*(complexr3k1*TTWAA[t] - complexr3k2*TT[t]*WAA[t])
complexr4 = cell*(complexr4k1*TTWWAA[t] - complexr4k2*TTW[t]*WAA[t])
complexr5 = cell*(-(complexr5k2*AA[t]*TTWW[t]) + complexr5k1*TTWWAA[t])
complexr6 = cell*(complexr6k1*TTWWAA[t] - complexr6k2*TT[t]*WWAA[t])
complexr7 = cell*(-(complexr7k2*AA[t]*TT[t]) + complexr7k1*TTAA[t])
complexr8 = cell*(-(complexr8k2*AA[t]*TTW[t]) + complexr8k1*TTWAA[t])
complexr9 = cell*(complexr9k1*TTWWAA[t] - complexr9k2*TTWAA[t]*W[t])
phosphorylationr1 = cell*phosphorylationr1k1*TTWWAA[t]
phosphorylationr10 = cell*phosphorylationr10k1*Bp[t]
phosphorylationr2 = cell*phosphorylationr2k1*AA[t]
phosphorylationr3 = cell*phosphorylationr3k1*WAA[t]
phosphorylationr4 = cell*phosphorylationr4k1*WWAA[t]
phosphorylationr5 = cell*phosphorylationr5k1*TTAA[t]
phosphorylationr6 = cell*phosphorylationr6k1*TTWAA[t]
phosphorylationr7 = cell*phosphorylationr7k1*Y[t]
phosphorylationr8 = cell*phosphorylationr8k1*Yp[t]
phosphorylationr9 = cell*phosphorylationr9k1*Yp[t]*Z[t]
phosphotransferr1 = cell*phosphotransferr1k1*AAp[t]*B[t]
phosphotransferr10 = cell*phosphotransferr10k1*TTAAp[t]*Y[t]
phosphotransferr11 = cell*phosphotransferr11k1*TTWAAp[t]*Y[t]
phosphotransferr12 = cell*phosphotransferr12k1*TTWWAAp[t]*Y[t]
phosphotransferr2 = cell*phosphotransferr2k1*B[t]*WAAp[t]
phosphotransferr3 = cell*phosphotransferr3k1*B[t]*WWAAp[t]
phosphotransferr4 = cell*phosphotransferr4k1*B[t]*TTAAp[t]
phosphotransferr5 = cell*phosphotransferr5k1*B[t]*TTWAAp[t]
phosphotransferr6 = cell*phosphotransferr6k1*B[t]*TTWWAAp[t]
phosphotransferr7 = cell*phosphotransferr7k1*AAp[t]*Y[t]
phosphotransferr8 = cell*phosphotransferr8k1*WAAp[t]*Y[t]
phosphotransferr9 = cell*phosphotransferr9k1*WWAAp[t]*Y[t]
end rate equations

begin parameters
Hill = 4.0
complexr1k1 = 0.00365
complexr1k2 = 1000000.0
complexr2k1 = 0.00894
complexr2k2 = 1000000.0
complexr3k1 = 297.0
complexr3k2 = 1000000.0
complexr4k1 = 0.64
complexr4k2 = 1000000.0
complexr5k1 = 0.112
complexr5k2 = 1000000.0
complexr6k1 = 0.0229
complexr6k2 = 1000000.0
complexr7k1 = 39.3
complexr7k2 = 1000000.0
complexr8k1 = 727.0
complexr8k2 = 1000000.0
complexr9k1 = "7.87e-06"
complexr9k2 = 1000000.0
complexr10k1 = 0.0511
complexr10k2 = 1000000.0
complexr11k1 = 0.102
complexr11k2 = 1000000.0
complexr12k1 = 0.0676
complexr12k2 = 1000000.0
phosphorylationr1k1 = 15.5
phosphorylationr2k1 = 0.0227
phosphorylationr3k1 = 0.0227
phosphorylationr4k1 = 0.0227
phosphorylationr5k1 = 0.0227
phosphorylationr6k1 = 0.0227
phosphorylationr7k1 = 0.00124
phosphorylationr8k1 = 0.037
phosphorylationr9k1 = 500000.0
phosphorylationr10k1 = 0.35
phosphotransferr1k1 = 6000000.0
phosphotransferr2k1 = 6000000.0
phosphotransferr3k1 = 6000000.0
phosphotransferr4k1 = 6000000.0
phosphotransferr5k1 = 6000000.0
phosphotransferr6k1 = 6000000.0
phosphotransferr7k1 = 30000000.0
phosphotransferr8k1 = 30000000.0
phosphotransferr9k1 = 30000000.0
phosphotransferr10k1 = 30000000.0
phosphotransferr11k1 = 30000000.0
phosphotransferr12k1 = 30000000.0
cell = 1.41
end parameters

begin initial conditions
AA[0] = AAi
AAp[0] = AApi
B[0] = Bi
Bp[0] = Bpi
SetYp[0] = SetYpi
TT[0] = TTi
TTAA[0] = TTAAi
TTAAp[0] = TTAApi
TTW[0] = TTWi
TTWAA[0] = TTWAAi
TTWAAp[0] = TTWAApi
TTWW[0] = TTWWi
TTWWAA[0] = TTWWAAi
TTWWAAp[0] = TTWWAApi
W[0] = Wi
WAA[0] = WAAi
WAAp[0] = WAApi
WWAA[0] = WWAAi
WWAAp[0] = WWAApi
Y[0] = Yi
Yp[0] = Ypi
Z[0] = Zi
end initial conditions

begin initial values
AAi = 2.5e-06
AApi = 0.0
Bi = 2e-06
Bpi = 0.0
SetYpi = 1.63e-06
TTi = 2.5e-06
TTAAi = 0.0
TTAApi = 0.0
TTWi = 0.0
TTWAAi = 0.0
TTWAApi = 0.0
TTWWi = 0.0
TTWWAAi = 0.0
TTWWAApi = 0.0
Wi = 5e-06
WAAi = 0.0
WAApi = 0.0
WWAAi = 0.0
WWAApi = 0.0
Yi = 1e-05
Ypi = 0.0
Zi = 2e-05
end initial values

begin assignment rules
Bias := 1 - Yp[t]^Hill/(2.333*SetYp[t]^Hill + Yp[t]^Hill)
end assignment rules

begin function definitions
end function definitions

begin events
end events

begin process annotations
end process annotations

begin species annotations
end species annotations

begin units
end units