begin name blum1 end name begin reactions reaction0 {1.0}H + {1.0}R = {1.0}HR reaction1 {2.0}HR = {1.0}HRRH reaction2 {1.0}HRRH + {1.0}GQ = {1.0}E reaction3 {1.0}IP3 = {1.0}$EXTERNAL reaction4 {1.0}$EXTERNAL = {1.0}IP3 end reactions begin rate equations reaction0 = cell*(-(reaction0k2*HR[t]) + reaction0k1*H[t]*R[t]) reaction1 = cell*(reaction1k1*HR[t]^2 - reaction1k2*HRRH[t]) reaction2 = cell*(-(reaction2k2*E[t]) + reaction2k1*GQ[t]*HRRH[t]) reaction3 = cell*reaction3k1*IP3[t] reaction4 = cell*reaction4k*E[t] end rate equations begin parameters alpha = 2.0 beta = 4.0 reaction0k1 = 2.5 reaction0k2 = 5.0 reaction1k1 = 2500.0 reaction1k2 = 5.0 reaction2k1 = 4000.0 reaction2k2 = 200.0 reaction3k1 = 10.0 reaction4k = 20000000.0 cell = 1.0 end parameters begin initial conditions E[0] = Ei GQ[0] = GQi H[0] = Hi HR[0] = HRi HRRH[0] = HRRHi IP3[0] = IP3i R[0] = Ri end initial conditions begin initial values Ei = 0.0 GQi = 0.1 Hi = 1.0 HRi = 0.0 HRRHi = 0.0 IP3i = 0.0 Ri = 0.01 end initial values begin assignment rules CHO := (0.001*alpha*(0.3 + 0.3*beta*E^(1 - beta*t)*t)*IP3[t])/(1 + 0.001*alpha*IP3[t]) end assignment rules begin function definitions end function definitions begin events RemovalH = (t > 5, {H[t] -> 0}, 0) end events begin process annotations end process annotations begin species annotations E http://identifiers.org/pirsf/PIRSF005483 end species annotations begin units end units