begin name bindschadler1 end name begin reactions InactivatedtoSCell1 {1.0}$EXTERNAL = {1.0}h1 InactivatedtoSCell2 {1.0}$EXTERNAL = {1.0}h2 JleakCell1 {1.0}$EXTERNAL = {1.0}c1 JleakCell2 {1.0}$EXTERNAL = {1.0}c2 JpumpCell1 {1.0}c1 = {1.0}$EXTERNAL JpumpCell2 {1.0}c2 = {1.0}$EXTERNAL JreceptorCell1 {1.0}$EXTERNAL = {1.0}c1 JreceptorCell2 {1.0}$EXTERNAL = {1.0}c2 OpentoInactivatedCell1 {1.0}h1 = {1.0}$EXTERNAL OpentoInactivatedCell2 {1.0}h2 = {1.0}$EXTERNAL diffusion {1.0}c2 = {1.0}c1 end reactions begin rate equations InactivatedtoSCell1 = compartment*Phi3c1*(1 - h1[t]) InactivatedtoSCell2 = compartment*Phi3c2*(1 - h2[t]) JleakCell1 = compartment*JleakCell1Jleak JleakCell2 = compartment*JleakCell2Jleak JpumpCell1 = (compartment*JpumpCell1Vp*c1[t]^2)/(JpumpCell1Kp^2 + c1[t]^2) JpumpCell2 = (compartment*JpumpCell2Vp*c2[t]^2)/(JpumpCell2Kp^2 + c2[t]^2) JreceptorCell1 = (compartment*JreceptorCell1kf*JreceptorCell1p^4*Phi1c1^4*h1[t]^4)/(JreceptorCell1p*Phi1c1 + Phiminus1c1)^4 JreceptorCell2 = (compartment*JreceptorCell2kf*JreceptorCell2p^4*Phi1c2^4*h2[t]^4)/(JreceptorCell2p*Phi1c2 + Phiminus1c2)^4 OpentoInactivatedCell1 = (compartment*OpentoInactivatedCell1p*Phi1c1*Phi2c1*h1[t])/(OpentoInactivatedCell1p*Phi1c1 + Phiminus1c1) OpentoInactivatedCell2 = (compartment*OpentoInactivatedCell2p*Phi1c2*Phi2c2*h2[t])/(OpentoInactivatedCell2p*Phi1c2 + Phiminus1c2) diffusion = compartment*diffusionD*(-c1[t] + c2[t]) end rate equations begin parameters R1 = 6.0 R3 = 50.0 R5 = 1.6 k1 = 44.0 k2 = 26.5 k3 = 1.6 r2 = 100.0 r4 = 20.0 JreceptorCell1kf = 28.0 JreceptorCell1p = 0.2778 JpumpCell1Vp = 1.2 JpumpCell1Kp = 0.18 JleakCell1Jleak = 0.2 OpentoInactivatedCell1p = 0.2778 JreceptorCell2kf = 28.0 JreceptorCell2p = 0.2778 JpumpCell2Vp = 1.2 JpumpCell2Kp = 0.18 JleakCell2Jleak = 0.2 OpentoInactivatedCell2p = 0.2778 diffusionD = 0.01 compartment = 1.0 end parameters begin initial conditions c1[0] = c1i c2[0] = c2i h1[0] = h1i h2[0] = h2i end initial conditions begin initial values c1i = 0.3 c2i = 0.1 h1i = 0.8 h2i = 0.1 end initial values begin assignment rules Phi3c2 := k3/(R5 + c2[t]) Phi2c2 := (k2 + r4*c2[t])/(R3 + c2[t]) Phiminus1c2 := k1/(R3 + c2[t]) Phi1c2 := (r2*c2[t])/(R1 + c2[t]) Phi3c1 := k3/(R5 + c1[t]) Phi2c1 := (k2 + r4*c1[t])/(R3 + c1[t]) Phiminus1c1 := k1/(R3 + c1[t]) Phi1c1 := (r2*c1[t])/(R1 + c1[t]) end assignment rules begin function definitions end function definitions begin events end events begin process annotations Jpump_Cell1 http://identifiers.org/go/GO:0005388 Jpump_Cell2 http://identifiers.org/go/GO:0005388 Jreceptor_Cell1 http://identifiers.org/go/GO:0005220 Jreceptor_Cell1 http://identifiers.org/go/GO:0007204 Jreceptor_Cell2 http://identifiers.org/go/GO:0005220 Jreceptor_Cell2 http://identifiers.org/go/GO:0007204 end process annotations begin species annotations c1 http://identifiers.org/chebi/CHEBI:29108 c1 http://identifiers.org/kegg.compound/C00076 c2 http://identifiers.org/chebi/CHEBI:29108 c2 http://identifiers.org/kegg.compound/C00076 end species annotations begin units end units