#arnold8

FIX: E_RuBisCO Pic TPc

#reactions
ATP_S:
 {1.0}ADP + {1.0}Pi = {1.0}ATP
  chloroplast * function_10(V6, ADP, Pi, K1, K2)
PGA_red:
 {1.0}PGA + {1.0}ATP = {1.0}ADP + {1.0}TP + {1.0}Pi
  chloroplast * function_6(Vm, PGA, ATP, ADP, TP, Pi, k, K1, K2)
RuBP_reg:
 {1.0}Ru5P + {1.0}ATP = {1.0}RuBP + {1.0}ADP
  chloroplast * function_8(Vm, Ru5P, ATP, K1, K2, K3, Pi)
RuBisCO:
 {1.0}RuBP = {2.0}PGA
  chloroplast * function_5(k, E_RuBisCO, totRuBP, K)
TPT:
 {1.0}TP + {1.0}Pic = {1.0}TPc + {1.0}Pi
  function_9(TP, Pic, TPc, Pi, K2, K1, Vm)
TP_red:
 {5.0}TP = {3.0}Ru5P + {2.0}Pi
  chloroplast * function_7(Vm, TP, K)


#parameters
P_0 = 16.0
V6 = 5.8801285588795
E_RuBisCO = 3.56
Pic = 1.4
TPc = 0.2
RuBisCO_k = 0.504
RuBisCO_K = 0.04
PGA_red_Vm = 3.49
PGA_red_k = 14.0
PGA_red_K1 = 1.0
PGA_red_K2 = 1.0
TP_red_Vm = 1.06
TP_red_K = 0.4
RuBP_reg_Vm = 4.81
RuBP_reg_K1 = 0.05
RuBP_reg_K2 = 0.5
RuBP_reg_K3 = 0.05
TPT_K2 = 0.25
TPT_K1 = 0.08
TPT_Vm = 3.3
ATP_S_K1 = 0.08
ATP_S_K2 = 0.5
chloroplast = 1.0
cytosol = 1.0


#initial values
ADP = 0.82
ATP = 0.68
PGA = 2.4
Pi = 5.0
Ru5P = 0.0500747384155456
RuBP = 2.0
TP = 0.5


#assignment rules
!F totRuBP = 1.0 / 2.0 * (P_0 - (PGA + TP + Ru5P + Pi + ATP))