begin name arnold7 end name begin reactions ATPS {1.0}ADP + {1.0}Pi = {1.0}ATP Diffu {1.0}Suc = {1.0}SucV F6PTK1 {1.0}HeP = {1.0}TPGA + {1.0}E4P FBPAase {2.0}TP = {1.0}HeP + {1.0}Pi FBPcAase {2.0}TPc = {1.0}HePc + {1.0}Pic PGAred {1.0}PGA + {1.0}ATP = {1.0}TP + {1.0}ADP + {1.0}Pi Respi {1.0}Suc = {1.0}$Resp Ru5PK {1.0}Ru5P + {1.0}ATP = {1.0}RuBP + {1.0}ADP RuBisCO {1.0}RuBP + {1.0}$CO2 = {2.0}PGA S7PTK1R5PI {1.0}S7P = {1.0}TPGA + {1.0}Ru5P SBPAase {1.0}E4P + {1.0}TP = {1.0}S7P + {1.0}Pi StarchP {1.0}GG + {1.0}Pi = {1.0}HeP StarchS {1.0}ATP + {1.0}HeP = {1.0}GG + {1.0}ADP + {2.0}Pi SucS {2.0}HePc + {1.0}UTP = {1.0}Suc + {1.0}UDP + {3.0}Pic TK2Ru5PE {1.0}TPGA + {1.0}TP = {1.0}Ru5P TPT {1.0}TP + {1.0}Pic = {1.0}TPc + {1.0}Pi Transl {1.0}Suc = {1.0}$E UTPS {1.0}UDP + {1.0}Pic = {1.0}UTP end reactions begin rate equations ATPS = ATPSk1*chloroplast*ADP[t]*Pi[t] Diffu = D*Suc[t] - D*SucV[t] F6PTK1 = chloroplast*F6PTK1k1*HeP[t] FBPAase = chloroplast*(-(FBPAasek2*HeP[t]*Pi[t]) + FBPAasek1*TP[t]^2) FBPcAase = cytosol*FBPcAasek1*TPc[t]^2 PGAred = chloroplast*PGAredk1*ATP[t]*PGA[t] Respi = r*Suc[t] Ru5PK = chloroplast*Ru5PKk1*ATP[t]*Ru5P[t] RuBisCO = chloroplast*CO2*RuBisCOk1*RuBP[t] S7PTK1R5PI = chloroplast*S7PTK1R5PIk1*S7P[t] SBPAase = chloroplast*SBPAasek1*E4P[t]*TP[t] StarchP = chloroplast*StarchPk1*GG[t]*Pi[t] StarchS = chloroplast*StarchSk1*ATP[t]*HeP[t] SucS = function1[v15] TK2Ru5PE = chloroplast*TK2Ru5PEk1*TP[t]*TPGA[t] TPT = TPTk1*Pic[t]*TP[t] Transl = -(E*phi) + phi*Suc[t] UTPS = UTPSk1*Pic[t]*UDP[t] end rate equations begin parameters D = 0.0001 phi = 0.0001 r = "3e-05" CO2 = 31.0 E = 0.5 Resp = 1.0 RuBisCOk1 = 0.006 PGAredk1 = 0.0207 FBPAasek1 = 4.0 FBPAasek2 = 0.0 F6PTK1k1 = 0.031 SBPAasek1 = 3.1 S7PTK1R5PIk1 = 0.31 TK2Ru5PEk1 = 6.2 Ru5PKk1 = 0.031 ATPSk1 = 0.279 StarchSk1 = 0.002 StarchPk1 = "4e-05" TPTk1 = 0.5 FBPcAasek1 = 1.55 UTPSk1 = 0.00755 chloroplast = 1.0 cytosol = 1.0 phloem = 1.0 vacuole = 1.0 end parameters begin initial conditions ADP[0] = ADPi ATP[0] = ATPi E4P[0] = E4Pi GG[0] = GGi HeP[0] = HePi HePc[0] = HePci PGA[0] = PGAi Pi[0] = Pii Pic[0] = Pici Ru5P[0] = Ru5Pi RuBP[0] = RuBPi S7P[0] = S7Pi Suc[0] = Suci SucV[0] = SucVi TP[0] = TPi TPGA[0] = TPGAi TPc[0] = TPci UDP[0] = UDPi UTP[0] = UTPi end initial conditions begin initial values ADPi = 0.53 ATPi = 3.875 E4Pi = 0.05 GGi = 99.9999999999999 HePi = 2.2 HePci = 0.1 PGAi = 2.4 Pii = 2.5 Pici = 0.8 Ru5Pi = 0.05 RuBPi = 2.0 S7Pi = 2.0 Suci = 77.31 SucVi = 77.31 TPi = 0.5 TPGAi = 0.2 TPci = 0.114 UDPi = 1.613 UTPi = 3.871 end initial values begin assignment rules v15 := 0.0258*HePc[t]*UTP[t] end assignment rules begin function definitions function1[v_] := v end function definitions begin events end events begin process annotations end process annotations begin species annotations end species annotations begin units end units