| AggP_ProteasomeSequestering |
— |
|
AggP_Proteasome + SeqAggP > {2.0}SeqAggP
kseqAggPProt * AggP_Proteasome * SeqAggP * kalive
|
|
|
| MisPInclusionGrowth |
— |
|
MisP + SeqAggP > {2.0}SeqAggP
kseqMisP * MisP * SeqAggP * kalive
|
|
|
| MisP_Aggregation1 |
— |
|
{2.0}MisP > AggP1
kaggMisP * MisP * (MisP - 1) * 0.5 * kalive
|
|
|
| MisP_Aggregation2 |
— |
|
MisP + AggP1 > AggP2
kagg2MisP * MisP * AggP1 * kalive
|
|
|
| MisP_Aggregation3 |
— |
|
MisP + AggP2 > AggP3
kagg2MisP * MisP * AggP2 * kalive
|
|
|
| MisP_Aggregation4 |
— |
|
MisP + AggP3 > AggP4
kagg2MisP * MisP * AggP3 * kalive
|
|
|
| MisP_Aggregation5 |
— |
|
MisP + AggP4 > AggP5
kagg2MisP * MisP * AggP4 * kalive
|
|
|
| MisP_Degradation |
— |
|
MisP_Proteasome > Proteasome
kdegMisP * MisP_Proteasome * kalive * kproteff
|
|
|
| MisP_Disaggregation1 |
— |
|
AggP1 > {2.0}MisP
kdisaggMisP1 * AggP1 * kalive
|
|
|
| MisP_Disaggregation2 |
— |
|
AggP2 > MisP + AggP1
kdisaggMisP2 * AggP2 * kalive
|
|
|
| MisP_Disaggregation3 |
— |
|
AggP3 > MisP + AggP2
kdisaggMisP3 * AggP3 * kalive
|
|
|
| MisP_Disaggregation4 |
— |
|
AggP4 > MisP + AggP3
kdisaggMisP4 * AggP4 * kalive
|
|
|
| MisP_Disaggregation5 |
— |
|
AggP5 > MisP + AggP4
kdisaggMisP5 * AggP5 * kalive
|
|
|
| MisP_InclusionFormation |
— |
|
MisP + AggP5 > {7.0}SeqAggP
kagg2MisP * MisP * AggP5 * kalive
|
|
|
| MisP_ProteasomeBinding |
— |
|
MisP + Proteasome > MisP_Proteasome
kbinMisPProt * MisP * Proteasome * kalive
|
|
|
| MisP_ProteasomeRelease |
— |
|
MisP_Proteasome > MisP + Proteasome
krelMisPProt * MisP_Proteasome * kalive
|
|
|
| MisP_ProteasomeSequestering |
— |
|
MisP_Proteasome + SeqAggP > {2.0}SeqAggP
kseqMisPProt * MisP_Proteasome * SeqAggP * kalive
|
|
|
| Misfolding |
— |
|
NatP + ROS > MisP + ROS
kmisfold * NatP * ROS * kalive
|
|
|
| P38DeathPathway |
— |
|
p38_P > p38_P + p38death
kp38death * p38_P * kalive * kp38act
|
|
|
| PIDeathPathway |
— |
|
AggP_Proteasome > AggP_Proteasome + PIdeath
kPIdeath * AggP_Proteasome * kalive
|
|
|
| PolyQAggregation1 |
— |
|
{2.0}PolyQ + ROS > AggPolyQ1 + ROS
kaggPolyQ * PolyQ * (PolyQ - 1) * 0.5 * (pow(ROS, 2) / (pow(10, 2) + pow(ROS, 2))) * kalive
|
|
|
| PolyQAggregation2 |
— |
|
PolyQ + AggPolyQ1 + ROS > AggPolyQ2 + ROS
kaggPolyQ * PolyQ * AggPolyQ1 * (pow(ROS, 2) / (pow(10, 2) + pow(ROS, 2))) * kalive
|
|
|
| PolyQAggregation3 |
— |
|
PolyQ + AggPolyQ2 + ROS > AggPolyQ3 + ROS
kaggPolyQ * PolyQ * AggPolyQ2 * (pow(ROS, 2) / (pow(10, 2) + pow(ROS, 2))) * kalive
|
|
|
| PolyQAggregation4 |
— |
|
PolyQ + AggPolyQ3 + ROS > AggPolyQ4 + ROS
kaggPolyQ * PolyQ * AggPolyQ3 * (pow(ROS, 2) / (pow(10, 2) + pow(ROS, 2))) * kalive
|
|
|
| PolyQAggregation5 |
— |
|
PolyQ + AggPolyQ4 + ROS > AggPolyQ5 + ROS
kaggPolyQ * PolyQ * AggPolyQ4 * (pow(ROS, 2) / (pow(10, 2) + pow(ROS, 2))) * kalive
|
|
|
| PolyQDegradation |
— |
|
PolyQ_Proteasome > Proteasome
kdegPolyQ * PolyQ_Proteasome * kalive * kproteff
|
|
|
| PolyQDisaggregation1 |
— |
|
AggPolyQ1 > {2.0}PolyQ
kdisaggPolyQ1 * AggPolyQ1 * kalive
|
|
|
| PolyQDisaggregation2 |
— |
|
AggPolyQ2 > PolyQ + AggPolyQ1
kdisaggPolyQ2 * AggPolyQ2 * kalive
|
|
|
| PolyQDisaggregation3 |
— |
|
AggPolyQ3 > PolyQ + AggPolyQ2
kdisaggPolyQ3 * AggPolyQ3 * kalive
|
|
|
| PolyQDisaggregation4 |
— |
|
AggPolyQ4 > PolyQ + AggPolyQ3
kdisaggPolyQ4 * AggPolyQ4 * kalive
|
|
|
| PolyQDisaggregation5 |
— |
|
AggPolyQ5 > PolyQ + AggPolyQ4
kdisaggPolyQ5 * AggPolyQ5 * kalive
|
|
|
| PolyQInclusionFormation |
— |
|
PolyQ + AggPolyQ5 > {7.0}SeqAggP
kaggPolyQ * PolyQ * AggPolyQ5 * kalive
|
|
|
| PolyQInclusionGrowth |
— |
|
PolyQ + SeqAggP > {2.0}SeqAggP
kseqPolyQ * PolyQ * SeqAggP * kalive
|
|
|
| PolyQ_ProteasomeSequestering |
— |
|
PolyQ_Proteasome + SeqAggP > {2.0}SeqAggP
kseqPolyQProt * PolyQ_Proteasome * SeqAggP * kalive
|
|
|
| ProteasomeInhibition1 |
— |
|
AggPolyQ1 + Proteasome > AggP_Proteasome
kinhprot * AggPolyQ1 * Proteasome * kalive
|
|
|
| ProteasomeInhibition2 |
— |
|
AggPolyQ2 + Proteasome > AggP_Proteasome
kinhprot * AggPolyQ2 * Proteasome * kalive
|
|
|
| ProteasomeInhibition3 |
— |
|
AggPolyQ3 + Proteasome > AggP_Proteasome
kinhprot * AggPolyQ3 * Proteasome * kalive
|
|
|
| ProteasomeInhibition4 |
— |
|
AggPolyQ4 + Proteasome > AggP_Proteasome
kinhprot * AggPolyQ4 * Proteasome * kalive
|
|
|
| ProteasomeInhibition5 |
— |
|
AggPolyQ5 + Proteasome > AggP_Proteasome
kinhprot * AggPolyQ5 * Proteasome * kalive
|
|
|
| ProteasomeInhibitionAggP1 |
— |
|
AggP1 + Proteasome > AggP_Proteasome
kinhprot * AggP1 * Proteasome * kalive
|
|
|
| ProteasomeInhibitionAggP2 |
— |
|
AggP2 + Proteasome > AggP_Proteasome
kinhprot * AggP2 * Proteasome * kalive
|
|
|
| ProteasomeInhibitionAggP3 |
— |
|
AggP3 + Proteasome > AggP_Proteasome
kinhprot * AggP3 * Proteasome * kalive
|
|
|
| ProteasomeInhibitionAggP4 |
— |
|
AggP4 + Proteasome > AggP_Proteasome
kinhprot * AggP4 * Proteasome * kalive
|
|
|
| ProteasomeInhibitionAggP5 |
— |
|
AggP5 + Proteasome > AggP_Proteasome
kinhprot * AggP5 * Proteasome * kalive
|
|
|
| ProteinSynthesis |
— |
|
Source > NatP
ksynNatP * Source * kalive
|
|
|
| ROSgenerationAggPProteasome |
— |
|
AggP_Proteasome > AggP_Proteasome + ROS
kgenROSAggP * AggP_Proteasome * kalive
|
|
|
| ROSgenerationBasal |
— |
|
Source > ROS
kgenROS * Source * kalive
|
|
|
| ROSgenerationSeqAggP |
— |
|
SeqAggP > SeqAggP + ROS
kgenROSSeqAggP * SeqAggP * kalive
|
|
|
| ROSgenerationSmallAggP1 |
— |
|
AggP1 > AggP1 + ROS
kgenROSAggP * AggP1 * kalive
|
|
|
| ROSgenerationSmallAggP2 |
— |
|
AggP2 > AggP2 + ROS
kgenROSAggP * AggP2 * kalive
|
|
|
| ROSgenerationSmallAggP3 |
— |
|
AggP3 > AggP3 + ROS
kgenROSAggP * AggP3 * kalive
|
|
|
| ROSgenerationSmallAggP4 |
— |
|
AggP4 > AggP4 + ROS
kgenROSAggP * AggP4 * kalive
|
|
|
| ROSgenerationSmallAggP5 |
— |
|
AggP5 > AggP5 + ROS
kgenROSAggP * AggP5 * kalive
|
|
|
| ROSgenerationSmallAggPolyQ1 |
— |
|
AggPolyQ1 > AggPolyQ1 + ROS
kgenROSAggP * AggPolyQ1 * kalive
|
|
|
| ROSgenerationSmallAggPolyQ2 |
— |
|
AggPolyQ2 > AggPolyQ2 + ROS
kgenROSAggP * AggPolyQ2 * kalive
|
|
|
| ROSgenerationSmallAggPolyQ3 |
— |
|
AggPolyQ3 > AggPolyQ3 + ROS
kgenROSAggP * AggPolyQ3 * kalive
|
|
|
| ROSgenerationSmallAggPolyQ4 |
— |
|
AggPolyQ4 > AggPolyQ4 + ROS
kgenROSAggP * AggPolyQ4 * kalive
|
|
|
| ROSgenerationSmallAggPolyQ5 |
— |
|
AggPolyQ5 > AggPolyQ5 + ROS
kgenROSAggP * AggPolyQ5 * kalive
|
|
|
| ROSremoval |
— |
|
ROS > Sink
kremROS * ROS * kalive
|
|
|
| Refolding |
— |
|
MisP > NatP
krefold * MisP * kalive
|
|
|
| mRFPuDegradation |
— |
|
mRFPu_Proteasome > Proteasome
kdegmRFPu * mRFPu_Proteasome * kalive * kproteff
|
|
|
| mRFPuProteasomeBinding |
— |
|
mRFPu + Proteasome > mRFPu_Proteasome
kbinmRFPu * mRFPu * Proteasome * kalive
|
|
|
| mRFPuProteasomeRelease |
— |
|
mRFPu_Proteasome > mRFPu + Proteasome
krelmRFPu * mRFPu_Proteasome * kalive
|
|
|
| mRFPuProteasomeSequestering |
— |
|
mRFPu_Proteasome + SeqAggP > {2.0}SeqAggP
kseqmRFPuProt * mRFPu_Proteasome * SeqAggP * kalive
|
|
|
| mRFPuSequestering |
— |
|
mRFPu + SeqAggP > {2.0}SeqAggP
kseqmRFPu * mRFPu * SeqAggP * kalive
|
|
|
| mRFPuSynthesis |
— |
|
Source > mRFPu
ksynmRFPu * Source * kalive
|
|
|
| p38_P_ROS_Generation |
— |
|
p38_P > p38_P + ROS
kgenROSp38 * p38_P * kp38act * kalive
|
|
|
| p38activation |
— |
|
ROS + p38 > ROS + p38_P
kactp38 * ROS * p38 * kalive
|
|
|
| p38inactivation |
— |
|
p38_P > p38
kinactp38 * p38_P * kalive
|
|
|
| polyQSynthesis |
— |
|
Source > PolyQ
ksynPolyQ * Source * kalive
|
|
|
| polyqProteasomeBinding |
— |
|
PolyQ + Proteasome > PolyQ_Proteasome
kbinPolyQ * PolyQ * Proteasome * kalive
|
|
|
| polyqProteasomeRelease |
— |
|
PolyQ_Proteasome > PolyQ + Proteasome
krelPolyQ * PolyQ_Proteasome * kalive
|
|
|