K S m1 A1 m2 A2 K S m1 A1 m2 A2 k1 S m1 m2 k2 P k1 S m1 m2 k2 P v S m k1 A1 k2 A2 k3 I1 v S m k1 A1 k2 A2 k3 I1 K S e1 A1 A2 e2 I1 K S e1 A1 A2 e2 I1 K S k1 M1 M2 k2 M3 M4 K S k1 M1 M2 k2 M3 M4 100 K S A1 m2 A2 m3 A3 K S A1 m2 A2 m3 A3 K S M1 M2 k2 M3 k1 K S M1 k1 M2 k2 M3 k S k S k1 s k2 m2 p k1 s k2 m2 p v S k1 a1 k2 a2 k3 a3 v S k1 a1 k2 a2 k3 a3 K S A K S A Lumen Rate_Law_for_CD_Lumen_death K Cdiff M_LP m2 N_Lum m3 Commensal_Harmful Lumen KSA K Cdiff Commensal_Harmful Lumen k1 Commensal_Dead Lumen Rate_Law_for_Commensal_Harmful_Death_1 K Commensal_Harmful N_LP A1 E_i A2 Lumen Rate_Law_for_Commensal_Regrowth k1 Commensal_Beneficial N_Lum E_i k2 Commensal_Dead Epithelium Rate_Law_for_E_damage v E k1 N_Lum k2 Th17_LP k3 M_LP Epithelium k1 E_d Epithelium KSA K E Cdiff Epithelium Rate_Law_for_E_damage v E_i k1 N_Lum k2 Th17_LP k3 M_LP Epithelium k1 E_i Rate_Law_for_M_Activation K M0 e1 Th17_LP Cdiff e2 iTreg_LP Epithelium k1 M_LP Rate_Law_for_N_Activation_Migration v N_LP Cdiff k1 E_d k2 Th17_LP k3 iTreg_LP Lumen KSA K N_Lum Commensal_Beneficial LP k1 Th17_LP MLN k1 eDC_MLN k1 Th17_MLN LP Rate_Law_for_Th17plas k1 Th17_LP k2 Cdiff iTreg_LP LP k1 Th1_LP MLN Rate_Law_for_eDC K eDC_MLN Commensal_Dead Commensal_Beneficial k2 E k1 k1 Th1_MLN LP k1 iTreg_LP k1 tDC_MLN k1 iTreg_MLN MLN k1 eDC_MLN k1 eDC_LP Rate_Law_for_Effector_DC_Production_1 k Cdiff Lumen Rate_Law_for_Effector_DC_Production_1 k tDC_MLN Lumen k1 tDC_LP Rate_Law_for_tDC_Production K Cdiff k1 Commensal_Beneficial Commensal_Dead k2 E E_i